Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00642 ATGAGACGTCCAACCGCCGAGACGCTTGTGGTTCACATAGCCATCTTTTCAGCGGTGGTGGCGGCGACAGTAGCTTCGCAAGCCAAACCCGGGTGTGAAAGTAAGTGTGGGAACTTGGAAATTCCATATCCGTTCGGGATGAAGGAAGGGTGTTATCTCAACATTAATTTCTCTGTCACCTGCAAAACAAATCATTTGGACTCCCCAAAGGCATTTCTAGTGAACAGCAACATTGAAGTAATCAATATATCCCTCTATGGCGAGCTCAACATCTTGAACTACGTAGCCCGAGATTGCTACACAAAAGATGGCCTTCCTGACATCAACAACAACAGACCAAGTCTCAGGGTGCCCATGTTCACAATTTCCAATACAAAGAACAAGTTAACCGTCGTCGGCTGCGACACTTACGCTTATATTTACGGTCAACTTGAGGAGGGATCCTACACAAGTGGGTGCATGGGGTTGTGTGGAAACAGTAGTAGAGCTATAAAAGATGGGTCCTGCTCTGGGAGTGGGTGCTGTCAATTGGAGATTCCCAAAGGCCTAAGAAATTTGGAGTTGGAGGTGAGAAGCTTCAAAAATCATACTCAAGTACACAGCTTCAATCCATGTGGGCATGCTTTTGTAGTCCAACAAGACAATTTTACTTTCTCTACTAAACATATTGAAAACTTCACGGAAGACAAAGTTCCGCTAGTGCTTGATTGGGGCATCAAAAAAGGTGCTTGCTTAACAGACCAATGTCCATGTGGACCAAACAGCAAAAGAAATAATAGCAAATCCCTTGATGGATCTGAATATTATTGTGACTGCTTGGATGGTTTTCGTGGAAATCCTTATCTCCCTCAAGGTTGTCAAGAGGGGTCCCATGACTGTGTACCCCAAGCTAAGTGTGAAGACAAACCAGGAAACTATATCTGCTCTTGTCCTGAGAAGTATGAAGGAGATGGAAAACTTGGGGGAACAGGAACTGGTGTGGGGTTTGTAGTTTTACTGATTGGTATCTCATGGTTATACTTGGGTTACAAGAAGTTGAAGTTCCTCCAACAGAAAGAAAAGTTTTTCAAGAAAAATGGAGGCTCCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAGAATTTTCAGCCAAGAGGAGTTGGAAAAAGCTACAAACAAGTTCAATGAAAGCACAGTGGTAGGAAAAGGTGGCTACGGCACTGTTCACAAAGGAGTCTTAGACGACGGTTCGGTTGTCGCGATTAAGAAGTCACAATTAGTGGACCAATCCCAAACTTCCCAATTCATCAACGAAGTAATTGTTCTATCCCAAGTCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAATGGCACACTCTTTGACCACATCCATGACCGAACAAAGTATTCAAATCATCTTTCCTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCATATTTGCATTCTTCAGCTTCTACACCAATTATCCACAGAGATATCAAATCCACTAACATACTTTTAGACCATAATTTCGTTGCAAACGTGTCAGATTTCGGCGCCTCGAAATTGGTTCCAATGGATCAAACTCAATTATCCACAATGATGCAAGGAACCCTTGGATATTTGGATCCTGAATACTTGTTAACAAGCGAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGGTTCTAGAGCTTATAACTGGGAAAAAAGCAGTGTGTTTTGATGGGCCAGAAGTGGTGAGGAATCTAGCCATGTATGTCCTTCGTGCAATGAAAGAAGATTGTTTAGTAGAAGTTGTAGATAAGGAAATGATGATGGACGAAGGGAAGTTGAACCAAATAAAAGAAGTGGCAAAGATAGCCAAAGAGTGTGTGAGAGTGAAAGGGGAGGAGCGGCCTAGCATGAAAGAGGTGGCTATGGAGTTAGAGGGACTGAGAGTAATGCAGGTTCAACATTCATGGGTTAACAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGATGAAACTTCAAACTCCACCCAATTTCTCGTCGGCAGTAGTATCAATGCCATGGACAATAGTATAAAGACTCACATTTCGACAACACATATTCCAAATGCAAGTCATAACGAGGTCACACTGAATACGCCTTTATTCACCATTTCCAACACCAAGAACAAGTTCGTTGCCATTGGCTGCGATACTCAAGCTTTTATTTCTGGGAAAATCGAGGGGGATGCCTATAAAGGTGGTTGCATGGCGTTGTGTGGAAACAGTAATAAAACTCTAACAGATGGGCACTGCGCTGGGAATCGGTGCTGTGAGTTGGAGATTCCCAAAGGCCTAAAATATTTGGAGATCGTGGTCAGAAGCTTCCACCAGCACAATGAGGTATTCGACTTCAATCCATGTGGGTATGCTTTTGTGATCCAACAAAACAACTTCACTCTCTCCTCCAAATATATTCACATGTTTACACATGTAAGAGTTCCCCTGATGCTTGATTGGGGCATCCCAAACGATGCAAATGAATGCAAGGATACAAGGTTGAATGATTGTGAACATAAACAGATGTGTGTTAACACACAAGGAAATTTTACCTGCTCTTGTCCTAAGAACTATAAAGGAGATGGAAGAAACAAGGGAAAAGGATGCATTCCAACCTATAAGGCCTTCGATCAATACGTCATCGGATGTACTGTAGGGTTAACACTTTTAGTAATTGGGTGCACATTGTTATGCTTGGGTTACGCAAAGTGGAAGGCCATCCACCAAAAGAAATATTTTTTCAAGAAAAATGGAGGTTTGGTGCTTGAACAACATCTTTCCGAGTGGGAATCACCGGTGGAGATGTTCAGAATTTTCACCCATGAAGAGTTGAAGAAGGCTACAAACAAGTTCCATGATAGCGCAGTGGTGGGAAAAGGTGGCTTTGGCACCGTTTACAAAGGCGTCTTAGATGATGGCTTGATAATTGCAATCAAGAAATCGAAATTAGTAGACCAATCCCAAACGGACCAATTCATTAATGAAGTCATTGTTCTGTCTCAAATCAACCATCGCAACGTGGTCAAGCTGCTGGGGTGCTGTTTGGAGACAAAAGTTCCTTTGTTGGTCTACGAGTTTGTAACCAATGGCACTCTCTTTGAACACATCCACAACAAAACAAACCATGCTCCTCTTTCCTGGGAAACTCGATTGAAGATAGCTTCAGAAATTGCTAGCGTCCTTGCATATTTGCATTCTTCCACTTCTACTCCCATCATCCACAGAGATATCAAGTCTTCTAATGTACTTTTAGACCATGATTACACAGCAAAGCTGTCTGATTTTGGAGCTTCAAAACTGGTACCGTTGGATCATACTCAGCTTTCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCTGAGTACTTGTTGACAAGTGAGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAATTTTGCTTTTTGAGCTTATCACGGGAAAGAAGGCGGTGCGTTTTGATGTCCCAGAAGAAGAAAGAACTCTAGCCAAGATAGTTCTGTGTGCAATGAATGAAGATCGTTTGGAAGAAATTGTTGAGGAGGGATTGGCAACAGAAGCAAATATTGAGGAGATACAAGAGGTGGCAAAGCTAGCAAAAGAGTGTGTAAGAGTTAAAGGGGAGGAGCGCCCCACCATGAAGGAGGTGGCTATAAAGTTGGAGGAGCTGCGAATGTTACATGCTTGA 3795 42.87 MRRPTAETLVVHIAIFSAVVAATVASQAKPGCESKCGNLEIPYPFGMKEGCYLNINFSVTCKTNHLDSPKAFLVNSNIEVINISLYGELNILNYVARDCYTKDGLPDINNNRPSLRVPMFTISNTKNKLTVVGCDTYAYIYGQLEEGSYTSGCMGLCGNSSRAIKDGSCSGSGCCQLEIPKGLRNLELEVRSFKNHTQVHSFNPCGHAFVVQQDNFTFSTKHIENFTEDKVPLVLDWGIKKGACLTDQCPCGPNSKRNNSKSLDGSEYYCDCLDGFRGNPYLPQGCQEGSHDCVPQAKCEDKPGNYICSCPEKYEGDGKLGGTGTGVGFVVLLIGISWLYLGYKKLKFLQQKEKFFKKNGGSMLQQHLSQWQSPADTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLDDGSVVAIKKSQLVDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSNHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFVANVSDFGASKLVPMDQTQLSTMMQGTLGYLDPEYLLTSELTEKSDVYSFGIVVLELITGKKAVCFDGPEVVRNLAMYVLRAMKEDCLVEVVDKEMMMDEGKLNQIKEVAKIAKECVRVKGEERPSMKEVAMELEGLRVMQVQHSWVNNNLSNSEEMISLLDETSNSTQFLVGSSINAMDNSIKTHISTTHIPNASHNEVTLNTPLFTISNTKNKFVAIGCDTQAFISGKIEGDAYKGGCMALCGNSNKTLTDGHCAGNRCCELEIPKGLKYLEIVVRSFHQHNEVFDFNPCGYAFVIQQNNFTLSSKYIHMFTHVRVPLMLDWGIPNDANECKDTRLNDCEHKQMCVNTQGNFTCSCPKNYKGDGRNKGKGCIPTYKAFDQYVIGCTVGLTLLVIGCTLLCLGYAKWKAIHQKKYFFKKNGGLVLEQHLSEWESPVEMFRIFTHEELKKATNKFHDSAVVGKGGFGTVYKGVLDDGLIIAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETKVPLLVYEFVTNGTLFEHIHNKTNHAPLSWETRLKIASEIASVLAYLHSSTSTPIIHRDIKSSNVLLDHDYTAKLSDFGASKLVPLDHTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGILLFELITGKKAVRFDVPEEERTLAKIVLCAMNEDRLEEIVEEGLATEANIEEIQEVAKLAKECVRVKGEERPTMKEVAIKLEELRMLHA 1264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18552832 18564771 + ClCG08G006190.1 Cla08g00642 278297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00642 1264 SMART egf_5 863 905 IPR000742 -
Cla08g00642 1264 SMART egf_5 243 287 IPR000742 -
Cla08g00642 1264 Pfam Protein kinase domain 986 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00642 1264 SUPERFAMILY Protein kinase-like (PK-like) 962 1258 IPR011009 -
Cla08g00642 1264 CDD STKc_IRAK 399 668 - -
Cla08g00642 1264 Gene3D Laminin 855 900 - -
Cla08g00642 1264 Gene3D Laminin 282 321 - -
Cla08g00642 1264 SUPERFAMILY Protein kinase-like (PK-like) 372 666 IPR011009 -
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 859 1262 IPR045274 GO:0007166
Cla08g00642 1264 Gene3D Transferase(Phosphotransferase) domain 1 469 689 - -
Cla08g00642 1264 Gene3D Transferase(Phosphotransferase) domain 1 1062 1263 - -
Cla08g00642 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1107 1119 IPR008271 GO:0004672|GO:0006468
Cla08g00642 1264 ProSiteProfiles Protein kinase domain profile. 393 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00642 1264 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 878 889 IPR000152 -
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 690 IPR045274 GO:0007166
Cla08g00642 1264 Gene3D Phosphorylase Kinase; domain 1 365 468 - -
Cla08g00642 1264 Gene3D Phosphorylase Kinase; domain 1 958 1061 - -
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 859 1262 - -
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 12 690 - -
Cla08g00642 1264 Pfam EGF domain 286 318 IPR024731 -
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 696 860 IPR045274 GO:0007166
Cla08g00642 1264 ProSitePatterns Protein kinases ATP-binding region signature. 399 422 IPR017441 GO:0005524
Cla08g00642 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Cla08g00642 1264 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247
Cla08g00642 1264 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cla08g00642 1264 ProSitePatterns Calcium-binding EGF-like domain signature. 860 887 IPR018097 GO:0005509
Cla08g00642 1264 Pfam Protein tyrosine and serine/threonine kinase 397 665 IPR001245 GO:0004672|GO:0006468
Cla08g00642 1264 Pfam Calcium-binding EGF domain 860 897 IPR001881 GO:0005509
Cla08g00642 1264 SMART egfca_6 286 327 IPR001881 GO:0005509
Cla08g00642 1264 SMART egfca_6 860 905 IPR001881 GO:0005509
Cla08g00642 1264 ProSiteProfiles EGF-like domain profile. 860 899 IPR000742 -
Cla08g00642 1264 ProSiteProfiles Protein kinase domain profile. 986 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00642 1264 SUPERFAMILY EGF/Laminin 855 897 - -
Cla08g00642 1264 ProSitePatterns Protein kinases ATP-binding region signature. 992 1015 IPR017441 GO:0005524
Cla08g00642 1264 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 696 860 - -
Cla08g00642 1264 CDD STKc_IRAK 992 1259 - -
Cla08g00642 1264 SMART serkin_6 393 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00642 1264 SMART serkin_6 986 1262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00639 Cla-Chr8:18489931 Cla08g00642 Cla-Chr8:18552832 0 dispersed
Cla08g00642 Cla-Chr8:18552832 Cla11g01863 Cla-Chr11:32150679 1.98E-156 dispersed
Cla08g00641 Cla-Chr8:18530570 Cla08g00642 Cla-Chr8:18552832 0 tandem
Cla08g00642 Cla-Chr8:18552832 Cla08g00643 Cla-Chr8:18583193 1.67E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80730 PF00069 Pkinase 9.40E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00642 - - cmos:111460594 929.087