Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00643 ATGAAAATTCCAGCAGAGAAGCTTATTAAGCTCATAATTATATTATCAACAACTTTGGTTGCGGCGGCGGCGAAGGCGTTAACCGACTGCGATGAACGGTGTGGGAACTTGAAAATTCCATATCCGTTCGGGATGAAGAAAGGGTGTTATCTCAACAAAGATTTCTCCATTACTTGCAACAAAACTCATTATGATCCACCAAAGGCATTTCTTAAAGACACCAACATAGATATCACCAATATATCCATAATCCAAGGCCAACTCCACATCTTGCAATTCGTAGCCAAAGATTGCTATACAAAAAATGGTCCTCGTGAATCCAACACACCAACTCTCGAAGTCTCCGTGTTCACAATTTCCAACACCGACAACAAATTCACAGTCATTGGCTGCGATACTTATGCTTATATTTCTGGTGAACTTGAGGGAGAATCCTACAAAAGCCTAAAAAATTTGGAGTTGGAGGTGAGAAGCTTCGACAATCATAGTGAGGTACTCAACTTTAATCCATGTGGGTATGCTTTTGTAATCCAACAAGACAATTTCACTTTCTCTTCCAAATATATTCATAATTTTACACAAGAGGAAGTTCCATTGGTGCTTGATTGGGCCATTCCAACCAAGACTTCTTGCTCAAAGGCTGAGAACAAAGGCAATTGCAGTATCTGTGGACTAAACACCAAAAGGATTAACTTTCTCGATGATGGATCTGAATATCGTTGCCAGTGTTTGGAAGGCTTTGAGGGAAATCCATATCTCCCTCAAGGTTGCCAAGATGAACGCAAGAATGGAAGCCATAAATGTAAATACAAAGACTTGTGTGTTAACACGCCAGGAAACTATACTTGCCAATGTCCTAAGAACCATAAAGGAGATGGCAGATATGGAGGAGAAGGCTGCACTTCAAACTCCAAGTTTTCAATTCATATCATCATCGAAAAATGGAGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAATCACCCGACATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGACGAAAGCACAGTGGTTGGCAAAAGTATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCATCGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTGACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCGGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACCAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCAAACTCAAATATCCACAATGGTGCAAGGGACAGTTGGGTATTTGGATCCAGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGGATTGTACTTCTAGAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTTTGCAATGGAAGAAGATTGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGAGTGTGTGAAAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACTGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCGATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATCGAAAGCTGA 1941 41.73 MKIPAEKLIKLIIILSTTLVAAAAKALTDCDERCGNLKIPYPFGMKKGCYLNKDFSITCNKTHYDPPKAFLKDTNIDITNISIIQGQLHILQFVAKDCYTKNGPRESNTPTLEVSVFTISNTDNKFTVIGCDTYAYISGELEGESYKSLKNLELEVRSFDNHSEVLNFNPCGYAFVIQQDNFTFSSKYIHNFTQEEVPLVLDWAIPTKTSCSKAENKGNCSICGLNTKRINFLDDGSEYRCQCLEGFEGNPYLPQGCQDERKNGSHKCKYKDLCVNTPGNYTCQCPKNHKGDGRYGGEGCTSNSKFSIHIIIEKWRFDASTTSFSMAITRHAQNFHPRRVGEGYKQVRRKHSGWQKYDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRIVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIAGVLSYLHSSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDQTQISTMVQGTVGYLDPEYFLTSELTEKSDVYSFGIVLLELVTGKKAVCFDGPEEERNLAMYVLFAMEEDCVEEVVEKGMATEGNFEQIKEVAKLARECVKVKRAERPTMKEVAMELEGLKLMQVENCSWDRSNLFDGALNSSQHVSNDTDESIES 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18583193 18592839 + ClCG08G006200.1 Cla08g00643 278298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00643 646 ProSiteProfiles Protein kinase domain profile. 329 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00643 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 146 IPR045274 GO:0007166
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 185 304 IPR045274 GO:0007166
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 358 620 IPR045274 GO:0007166
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 146 - -
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 185 304 - -
Cla08g00643 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 358 620 - -
Cla08g00643 646 Gene3D Transferase(Phosphotransferase) domain 1 413 626 - -
Cla08g00643 646 Gene3D Laminin 208 297 - -
Cla08g00643 646 Gene3D Phosphorylase Kinase; domain 1 313 412 - -
Cla08g00643 646 Pfam Wall-associated receptor kinase galacturonan-binding 30 90 IPR025287 GO:0030247
Cla08g00643 646 SUPERFAMILY Protein kinase-like (PK-like) 355 608 IPR011009 -
Cla08g00643 646 SMART serkin_6 344 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00643 646 Pfam Protein tyrosine and serine/threonine kinase 355 607 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00641 Cla-Chr8:18530570 Cla08g00643 Cla-Chr8:18583193 0 dispersed
Cla08g00643 Cla-Chr8:18583193 Cla11g01863 Cla-Chr11:32150679 9.69E-160 dispersed
Cla08g00642 Cla-Chr8:18552832 Cla08g00643 Cla-Chr8:18583193 1.67E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80731 PF07714 PK_Tyr_Ser-Thr 1.10E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00643 - - cmos:111461403 731.095