Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00646 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCGCTTTCTATTATAAATCTCCAGAACAGGACTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACGCTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAAAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGCGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGCCATTCATGTCGTGGACTCGTAAACAAAGTGGGACCCGATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGAGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCCGATTGGGCGATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTTGCTGGCAAAAATCCTAAAATACAACTTCTAGCGCTCCATGTATTAGAGGCTGTAAGCAAAAATTGTGGCGATACTGTTTTTAGGCTGATTGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCCTTTGGTGGTGGCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCACTGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGCTTGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATTGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACCTTTGTGACGGAAGCTAGAAGAGCAGAACCTCCCGTTCCATCGGTTCCATATATCAACCTTGAGGACGATGAGTCGGAAGATGACTTCACTCCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAATAAGTCGGCTGGTGCTGAAATGATGGATCATCTTAGCGGCGACATGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATGCCCACCAATACACTCCCGGCAACACCTCGGGACGCTCAATCTCCAAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2415 47.62 MGDITTKFPRKPTHSPDPIPRTAAFYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDAASLSRDDSSSETSFRRDRSKNRSETRALVTRSKSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRSDPSAHFGFRVDVVNKFTMPFMSWTRKQSGTRWPVVLVQHENAEIQGQKGLFGCKRIREMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLAGKNPKIQLLALHVLEAVSKNCGDTVFRLIVDRNILHEMVKIVKKKPDSTVRDKILALVDAWQAAFGGGPKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSPPQIQPVTEHPVSASYDDLAVQVSLQSDSSGLSLPEIQNAQGLADVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEARRAEPPVPSVPYINLEDDESEDDFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSSNKSAGAEMMDHLSGDMYKPEESPRIVEPPSTSSSPFYTRQPLFDEPPPRSMPTNTLPATPRDAQSPSALPPPPSRHNQRQLYFEQQKAVTGGTQPHLSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18628507 18636646 - ClCG08G006240.2 Cla08g00646 278301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00646 804 CDD VHS 327 453 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 230 261 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 52 91 - -
Cla08g00646 804 CDD GAT_GGA_like_plant 506 584 - -
Cla08g00646 804 PANTHER TOM1-LIKE PROTEIN 318 803 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cla08g00646 804 Gene3D - 495 591 IPR038425 -
Cla08g00646 804 PANTHER TOM1-LIKE PROTEIN 4 318 803 - -
Cla08g00646 804 SUPERFAMILY GAT-like domain 476 587 - -
Cla08g00646 804 SUPERFAMILY ENTH/VHS domain 325 460 IPR008942 -
Cla08g00646 804 MobiDBLite consensus disorder prediction 145 165 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 197 261 - -
Cla08g00646 804 SMART VHS_2 322 455 IPR002014 GO:0035091|GO:0043130
Cla08g00646 804 MobiDBLite consensus disorder prediction 127 166 - -
Cla08g00646 804 Gene3D - 313 476 IPR008942 -
Cla08g00646 804 Pfam GAT domain 513 587 IPR004152 GO:0035091|GO:0043130
Cla08g00646 804 MobiDBLite consensus disorder prediction 599 756 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 1 22 - -
Cla08g00646 804 Pfam VHS domain 325 454 IPR002014 GO:0035091|GO:0043130
Cla08g00646 804 ProSiteProfiles VHS domain profile. 329 459 IPR002014 GO:0035091|GO:0043130
Cla08g00646 804 MobiDBLite consensus disorder prediction 50 91 - -
Cla08g00646 804 ProSiteProfiles GAT domain profile. 498 586 IPR004152 GO:0035091|GO:0043130
Cla08g00646 804 MobiDBLite consensus disorder prediction 730 756 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 616 638 - -
Cla08g00646 804 MobiDBLite consensus disorder prediction 639 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00646 - - - csv:101219096 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00339 Cla-Chr8:8126867 Cla08g00646 Cla-Chr8:18628507 4.82E-39 dispersed
Cla08g00646 Cla-Chr8:18628507 Cla11g00814 Cla-Chr11:12154770 0 dispersed
Cla08g00646 Cla-Chr8:18628507 Cla08g01232 Cla-Chr8:25226303 1.27E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00646 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0