Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00647 ATGGGTGTGTCTGCGGCCTCTATACTCAATCGCCTTCTTTCCCGTAAGAACCTGAGCGCCAGAACCGAACCCACAGGTCCCAAAGCCGCCGCCACCACAATCCTCAGATACCTGAAAGAGGGTCGCCTCCGAAAAGCTGTCTTGGTCCTGTTCGATTCCCCATTTCCCTTTCCTCATCCACTCTACGCTCGTCTCTTCCAAATCTGCTCTTCCACTCGCGCACTTGTTGAAGCTCGAAAGGTCGAGTCTCATTTGGTTACATTTTGCCCCACGCCGCCGATTTTCCTGTTGAATCGGGCCATTGAGGCGTATGGAAAATGTGGGTGTTTGGAGGATGCGAGGGAGCTGTTCGAGGAAATGCCTCACAGAGATGGGGGATCTTGGAATGCGATGATAACAGCGTATACGCGGAATGGGTATGCTTTAGAGGCATTGAATTTGTTTTTGGATATGAATAAATCCGGTGTTTATGCTACTGAGATAACTTTAGCTAGTGTCCTTGGGTCTTGTGGTTCTGTTTTCGCTCTTCACTTTTCGAGGCAGATTCACGGGCATATTCTTAAATGTGGCTTTGTTGGCAATGTGATTCTTGAGAGTTCGCTTGTTGATATCTATGGAAAGTGTAGGCTTATGAATGATGCACGTAGCATGTTTGATGAAATCCAGAATCGAAATGATGTTTCCTGGAATGTGATTGTTAGGCGCTATCTTGAGGTGGACAATGGGAAAGAAGCAGTTTCAATGTTTTTCCAAATGTTCCGAGAGGCAGTGATGCCATTGAGTTTTACTTTTTCCAATGCTCTGATTGCTTGTTCAAGTATGGCAGCCCTGATAGAAGGCAAGCAAATTCATGGCATTGTAGTTAAAGTAGGTTTGGAAGAAAATGAGGTTATTTCGAGCTCTTTAATTGACATGTATGTGAAATGTGGAAGATTAGTCAATGCTCACCAAGTATTTTCCCAACCTAGTTCAAGAAATCTTATTTCTTGGACTTCAATGGTATATGGATATGCAATGTCTGGGGAAGTTCTAAAAGCCAGGGAGCTTTTCAATGAAATGCCTGAACGCAATGTGATTTCATGGAATGCTATGCTGGCAGGGTATATTCATTCCTGTCAATGGGAAGAGGCACTAGAATTTGTCCACTTGATGCACAGGTCGATTAAGGATATTGATCATGGAACTCTTCGCCTGATATTGAAGATGTGTACTGGCCTTTTAGATGTTGAAAGAGGAAAGCAAGTCCATGGTTTTGTCTATAGAATTGGTTTCTATGCTAATCTCTATATTGGCAATGCCCTCCTTGACATGTATGGTAAATGTGGGAACTTGAAAAGTGCCAGGGTTTGGTTCTACCAGATGAGTCAATGGCGGGATAAAGTTTCCTGGAATGCTCTACTCACTACCTATGCTCGTCATGGCATGAGTGAACAGGCTATGGCAATTTTCTCAGAGATGCAATGGGAAACAGCTCCTAGTAAATTTACCTTTGCAACACTTTTAGGAGCCTGTGCAAACACTTTCGCATTAGAGCAAGGTAAACAAATCCATGGCTTCATGGTTAGAAATAATTATGAAATAGACATTGTAGTTAGCGGAGCTTTAGTCGATATGTACTGCAAATGCCGCCAACTTGAGTATGCTCTCAAGGTTTTTGAACATGTGGCTTCACGCGATGTGGTTCTGTGGAACTCCATTATCCTAGGATGTTGCCACAACAGAAGGGGTATGATAGTAATCGAACTATTTCAATCGATGACAATGGAGGAAGGCATTAAACCAGACCATGTGACCTTCCAAGGTATTTTGCTTGCTTGTGTGCATGAAAATCTTGTTGAGTTAGGTAGGCAGTATTTTGATTCAATGAGTGATAAGTTCTGTATCATACCTCGATTAGAGCACTACGAATGCATGATCGAGCTCTATGGCCGACATGGAAACATGGATGAGCTCGAAAAATTTCTCAACAATATGCCCTTTGATCCCACTGTTCCAATGCTCGAAAGAATCCTTGATGCATGTAGAAAACACGGACACTCGAGAATGGGTAGCTATACGACTCAACAAGCAGAGATTTCTTTAAATACCCGCAAAGACTGTTGGGTGTGGATTCTGGATCCAAAGGGTAAAATCTCTACCAAATCTCTGGCCCATGAATTGAACACATCTCCTGTGGATCATGAACTCAGCCATTGTGCTATTGATACTGGTGACAAACTACAGCTGACGACACCCACACATGGCTCTCTCACCACACTACTGCACTCTGCAAGGCTACCCATCGAGACACCAAGCCACTTTATCAAGTGTTCGCTCAAGGCCAGTGAAGAGCAGTTCATCAAGAGCTCAGTGAGAAGAAACCAAGTTCTTCATCTACGCAACCTGTTGATTGTTATAATCCCCATCAAGTCAAGTCATTCACAAACTAAGTTGTTGATGCTTATTTAA 2448 43.26 MGVSAASILNRLLSRKNLSARTEPTGPKAAATTILRYLKEGRLRKAVLVLFDSPFPFPHPLYARLFQICSSTRALVEARKVESHLVTFCPTPPIFLLNRAIEAYGKCGCLEDARELFEEMPHRDGGSWNAMITAYTRNGYALEALNLFLDMNKSGVYATEITLASVLGSCGSVFALHFSRQIHGHILKCGFVGNVILESSLVDIYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVDNGKEAVSMFFQMFREAVMPLSFTFSNALIACSSMAALIEGKQIHGIVVKVGLEENEVISSSLIDMYVKCGRLVNAHQVFSQPSSRNLISWTSMVYGYAMSGEVLKARELFNEMPERNVISWNAMLAGYIHSCQWEEALEFVHLMHRSIKDIDHGTLRLILKMCTGLLDVERGKQVHGFVYRIGFYANLYIGNALLDMYGKCGNLKSARVWFYQMSQWRDKVSWNALLTTYARHGMSEQAMAIFSEMQWETAPSKFTFATLLGACANTFALEQGKQIHGFMVRNNYEIDIVVSGALVDMYCKCRQLEYALKVFEHVASRDVVLWNSIILGCCHNRRGMIVIELFQSMTMEEGIKPDHVTFQGILLACVHENLVELGRQYFDSMSDKFCIIPRLEHYECMIELYGRHGNMDELEKFLNNMPFDPTVPMLERILDACRKHGHSRMGSYTTQQAEISLNTRKDCWVWILDPKGKISTKSLAHELNTSPVDHELSHCAIDTGDKLQLTTPTHGSLTTLLHSARLPIETPSHFIKCSLKASEEQFIKSSVRRNQVLHLRNLLIVIIPIKSSHSQTKLLMLI 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18665376 18668472 + ClCG08G006260.1 Cla08g00647 278302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00647 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Cla08g00647 815 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 562 689 - -
Cla08g00647 815 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 473 - -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 328 358 IPR002885 -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 127 158 IPR002885 -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 561 595 IPR002885 -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 101 123 IPR002885 -
Cla08g00647 815 TIGRFAM PPR: pentatricopeptide repeat domain 359 387 IPR002885 -
Cla08g00647 815 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 473 - -
Cla08g00647 815 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 562 689 - -
Cla08g00647 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 410 510 IPR011990 GO:0005515
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 175 282 IPR011990 GO:0005515
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 283 409 IPR011990 GO:0005515
Cla08g00647 815 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 472 565 - -
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 31 174 IPR011990 GO:0005515
Cla08g00647 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 584 723 IPR011990 GO:0005515
Cla08g00647 815 Pfam PPR repeat family 558 606 IPR002885 -
Cla08g00647 815 Pfam PPR repeat family 459 506 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 127 156 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 635 658 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 100 122 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 432 455 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 328 358 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 199 225 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 359 386 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 300 320 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 227 254 IPR002885 -
Cla08g00647 815 Pfam PPR repeat 534 554 IPR002885 -
Cla08g00647 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Cla08g00647 815 Gene3D Tetratricopeptide repeat domain 511 583 IPR011990 GO:0005515
Cla08g00647 815 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 472 565 - -
Cla08g00647 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 594 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00647 - - - csv:101210115 1236.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00647 Cla-Chr8:18665376 Cla04g00125 Cla-Chr4:3632868 4.77E-35 dispersed
Cla08g00647 Cla-Chr8:18665376 Cla09g00659 Cla-Chr9:6258153 6.29E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00647 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0