Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00648 ATGGAGTCTCCCCTTACTTCGTCCCGTGTTATTATTGCTTATGATGCTACCAAGGATCGCACTGAACACGAGCTTCAGCTTACTCTTAGGAACTTGTGGATGAGAGGCGACATTCTCCGTGGAGGTGATACGCTTGTTGTGCTTGGAATCCTTCATAAAGTGCCTCATCCGATGGGATACCAATTGAAAGCATGCCCCGACTCGTTTTTTGGAACCAGCCTTCGTGCAATGGAGGAAGAAGTTTCAAAGAAAGCTGACGCATATATCAGCATGCTTCAGCGAAGTGCAGAGTCGTGTGAAGAAGGAGGGGTCAGCATTGAAGTCAGAATTACTGCTGGTTTCCCCATTAAGAATGTTATTCTACAAGAAATTGTGGTCTTTAGCGCGAGCTGGGTTATACTTGACAGGCATTTTCGACGGGATGAGGGCTTTTACCTTAGACATTTATCTTCCAAGGTTGCTGTAATCCAAGATAACTTATCTGTGAGAGTTTTGAGAAATAAGGCTACAACTGGGCCAAATGAACATAATTCGAGGGATAGTGAACAGTCTATTCTCTCTATCAGAAGCTTCTCATTCCAAAGTAGTTCTCAGGATAGCTCATTGTCACATAGCAACTGGACCAGTTCATCTAGTAGCTTGTCTAGAGAGCATGCATCGGATTCTGAGTCGTCTTCTCGGCAAGAAAAAATAGGTATGGATTCCAGAGAACAGAACATTTATGCAACTGCTTCTCAGACTGTTCAGCTTCCAAATAAGGACATCTTACAACATAAATCTTTAGAAGCACCCATTTTATGTTCAGTTTGTGGAATGAGGTCTGATTTGTATATGAAGGATACCATGAGGTTTAGCTATGCTGACATTCAGCAAGCAACTTCCGATTTCTCTGCAGCAAACTTGTTAGGAGAGGGTGGTTATGGTCATGTTTTTAAGGGTGAACTAAAAAATGGACAACTCATTGCTGCAAAAGTGCGAAAAGAAGAAAGTAGTCAAGGATTGATAGAATTTCATTCTGAGATACAAGTTTTGACTTTTGCTCGTCACAAGAACATAGTGATGCTGTTGGGTTATAGTCACAAGGAAAATTTAAATGTTCTGGTGTATGAATATATTTGCAACAGGTCTCTTAATTTTCACTTATTTGGTAAGACGACAACAGTTCTTGAATTACATCAGAGGTATGGCATTGCTGTTGGAATTGCCAAGGGACTGCGTTTTCTTCATGAAGAATGTCGTGGAGGTCCTGTAATACATAGAGATGTCCGTCCAAGTAACATATTGCTTACACATGATTTTGTTCCGATGTTGGGTGATTTTGGCTTGGCCAAATGGAGGACAAAAGATGAAACTTCACATACAAGGATACTCGGCACATTTGGATATGTTGCACCAGAATATGCAGAAAATGGTATTCTTTCAGTAAGAACAGATGTATATGCATTTGGAATCATGTTACTACAATTGATATCTGGTCGCAAGGTGTTTGACGCAAAAGATGATGTACAAGGACAATCTCTGCGAGAGTGGGCTGAACCACTAATTGAGAACTTAGCATTACATAAATTAGTTGATGATCGAGTTGCAAAGACATATGACACATATGAATTGTATCTCATGGCCAGAACTGCATACTTGTGCGTGCAAATAAGCCCTGAGAACCGTCCATCAATGGGAGAGGTTGTGCGTCTTCTTGAAGGGGAAAATGATCATTTTCACTATCTGGGGGAGAAGCTAGTACCTCGTTATAACAAATAA 1758 40.84 MESPLTSSRVIIAYDATKDRTEHELQLTLRNLWMRGDILRGGDTLVVLGILHKVPHPMGYQLKACPDSFFGTSLRAMEEEVSKKADAYISMLQRSAESCEEGGVSIEVRITAGFPIKNVILQEIVVFSASWVILDRHFRRDEGFYLRHLSSKVAVIQDNLSVRVLRNKATTGPNEHNSRDSEQSILSIRSFSFQSSSQDSSLSHSNWTSSSSSLSREHASDSESSSRQEKIGMDSREQNIYATASQTVQLPNKDILQHKSLEAPILCSVCGMRSDLYMKDTMRFSYADIQQATSDFSAANLLGEGGYGHVFKGELKNGQLIAAKVRKEESSQGLIEFHSEIQVLTFARHKNIVMLLGYSHKENLNVLVYEYICNRSLNFHLFGKTTTVLELHQRYGIAVGIAKGLRFLHEECRGGPVIHRDVRPSNILLTHDFVPMLGDFGLAKWRTKDETSHTRILGTFGYVAPEYAENGILSVRTDVYAFGIMLLQLISGRKVFDAKDDVQGQSLREWAEPLIENLALHKLVDDRVAKTYDTYELYLMARTAYLCVQISPENRPSMGEVVRLLEGENDHFHYLGEKLVPRYNK 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18679207 18694007 + ClCG08G006270.1 Cla08g00648 278303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00648 585 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00648 585 MobiDBLite consensus disorder prediction 196 232 - -
Cla08g00648 585 SMART tyrkin_6 296 565 IPR020635 GO:0004713|GO:0006468
Cla08g00648 585 Pfam Protein kinase domain 299 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00648 585 Gene3D Phosphorylase Kinase; domain 1 270 371 - -
Cla08g00648 585 PANTHER OS01G0253100 PROTEIN 8 577 IPR045271 GO:0004714|GO:0006468
Cla08g00648 585 PANTHER RECEPTOR-LIKE KINASE 8 577 - -
Cla08g00648 585 SUPERFAMILY Protein kinase-like (PK-like) 280 567 IPR011009 -
Cla08g00648 585 ProSitePatterns Tyrosine protein kinases specific active-site signature. 417 429 IPR008266 GO:0004672|GO:0006468
Cla08g00648 585 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Cla08g00648 585 MobiDBLite consensus disorder prediction 196 219 - -
Cla08g00648 585 Gene3D Transferase(Phosphotransferase) domain 1 373 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00648 - - - mcha:111011855 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01971 Cla-Chr5:31514001 Cla08g00648 Cla-Chr8:18679207 6.99E-80 dispersed
Cla08g00648 Cla-Chr8:18679207 Cla11g01267 Cla-Chr11:26191783 9.06E-91 dispersed
Cla08g00648 Cla-Chr8:18679207 Cla07g01296 Cla-Chr7:30096135 3.62E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80732 PF00069 Pkinase 7.20E-39 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00648 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0