Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00652 ATGGGAATTAAGGTAGGTGAGGGAAGAGGCAGTGCAGTCGGAAGAGCCGTCGCTGTTGCCGCCGTTATCGGGTTGGTTATAATGTCTCAGTTGGAGAACGTGGAGGCAGCCGTTTACGTTGTCGGCGACTCCGGTGGATGGAACTTTAACGTCCAAGGTTGGCCCAAAGGAAAACGTTTTCGTGCCGGTGATATTCTCAAGTTCAATTACGACCCAACAATTCATAACGTGGTGGTGGTGAACCAAGCTGGGTATACCAACTGCAAAACTCCGGCGGGTGCCAAAGTGTACAAATCCGGCAGCGATCAGATAAAATTGGCTAAAGGACAAAGCTATTTCATCTGCAATTTCCCCGGCCACTGTGAGGCCGGCATGAAGATTGCCGAGATTCCACCGCCGTCGTTCCCCGCCGCCACCATCTCAACTGTGCTCCTGCTCCAAGCCTCCAAGGCTCCACCCCTGCAATTCCACGGACGATTCTTCTTTCCTTTTCCCTCTGCCTTTGCTCCCCCTCTTGGGGATGTCGATCAAGAGACCACTCTACGACCGCCTCAACCATCCTCTCCTCCGCCGCCGCTAGTTTCAGAAATTATAATGTCCTCGAGAGATTCTAACGTCCTTTTCAGTGGTGGCGGTATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTCGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAGGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCTGATTATATCAATGAAGAGAAAGGACAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTATTGTTGGGGGATCGTCTCCTTGTTGCAAATGTTGGGGATTCTAGAGTAGTTGCATCGAGGGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGACGAGCGCGAAAGGATTGAACAAGCTGGAGGGTTCATTCTTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACCATTTGTTGTCGCTGATCCCGAAATTAAGGAAGAAGAACTCGAAGGTGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATCTCAAACGAGGAAGCTGTAGCATTGGTACAACACAACCAAGATGCAGAAATGGCATCAAGAAACCTAATCCAAGAAGCTTTTGCTCGAGGGAGTTCCGACAACATTACATGCGTCATTGTACGGTTTGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTCGACTCCCGGTAGGACCTTTATAATTTTCCATTTTCGCTTTTTGAAAACGGCATCACGGTGGGCCAATCTGAAACCCAGTAAAATTAGTCCATGCCCACGAAATGAAAGGCCCGTTCCACAGCCCAAAAAAAGTAGCCGACAAAGCGGTAGAGTACACGTGGCTGTATACAAAAGGGCTGTCTCCACGAAAATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTTCTTCGGCTTCTGAGGAGGAGATTCGTAAGGCCTATTATCTTAAGGCAAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCAAGTGAAGCTTATCAAGTGTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAACATAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTTTTTGCACTTCTATTTGGGAGTGAATTATTTGAGGACTACATTGGACATTTAGCTGTAGCATCAATGGCCTCATCGGAATTAGAGAGCGAAATTGGCAATCCAGAGAGATTACATGATAAGTTGAAGGCAAGTGACAAAGACGGATTCTTACGACATGCTGAATCTGAAGCCAAAAGACTTTCTAATGCGGGTGCTTTTCAGTTGTTACAACTTCAAGATGATATTTGCCGGCAGTTTAAAATGGATGGTAGTGGTCCTGGAAATGATATTGAATCGCATATTCAAGCGAATAAAGACACATTCCTCAATTCTTTGTGGAAGCTTAATGTGGTTGACATAGAACTAACACTTATAAATGTGTGCCAGATGGTGCTACGCGATAATACTGTTAGAAAGGAAGAACTAAAAGCTCGTGCCCTGGCTCTGAAGATTCTTGGAAAGATATTCCAGGAGAAGCAGGCACAAAATGGTGGAACGTCAAGAAAGAAAGGTGCTGCTGCAATAGATGACGACGGAACGAGTTCAGAGAGCAGCGATGATGAGGACGATCCCCGAAGGCCGCTATCATATCGAACTCCTTTTCTTACTCAGGCAAGTAGATCAAACTCTTCTCTTTCCACTCAAAAGAGGATCCACTTTATCTCATGTACGTTGAAACTCGCGCGGAACTTTGCCCCGTAA 2577 45.6 MGIKVGEGRGSAVGRAVAVAAVIGLVIMSQLENVEAAVYVVGDSGGWNFNVQGWPKGKRFRAGDILKFNYDPTIHNVVVVNQAGYTNCKTPAGAKVYKSGSDQIKLAKGQSYFICNFPGHCEAGMKIAEIPPPSFPAATISTVLLLQASKAPPLQFHGRFFFPFPSAFAPPLGDVDQETTLRPPQPSSPPPPLVSEIIMSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPDFIKDTRTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERERIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPFVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRNLIQEAFARGSSDNITCVIVRFVVSTLDFESSDLGSTPGRTFIIFHFRFLKTASRWANLKPSKISPCPRNERPVPQPKKSSRQSGRVHVAVYKRAVSTKMVNDTEYYDILGVRSSASEEEIRKAYYLKAKQVHPDKNLNDPQAAERFQASEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESEIGNPERLHDKLKASDKDGFLRHAESEAKRLSNAGAFQLLQLQDDICRQFKMDGSGPGNDIESHIQANKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVRKEELKARALALKILGKIFQEKQAQNGGTSRKKGAAAIDDDGTSSESSDDEDDPRRPLSYRTPFLTQASRSNSSLSTQKRIHFISCTLKLARNFAP 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18724501 18740351 - ClCG08G006310.2 Cla08g00652 278307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00652 858 Pfam Plastocyanin-like domain 49 125 IPR003245 GO:0009055
Cla08g00652 858 SMART dnaj_3 552 609 IPR001623 -
Cla08g00652 858 MobiDBLite consensus disorder prediction 173 192 - -
Cla08g00652 858 Gene3D - 37 129 IPR008972 -
Cla08g00652 858 SMART PP2C_4 215 468 IPR001932 -
Cla08g00652 858 CDD PP2Cc 224 470 IPR001932 -
Cla08g00652 858 CDD Plantacyanin 37 131 IPR041844 -
Cla08g00652 858 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 189 471 - -
Cla08g00652 858 ProSiteProfiles dnaJ domain profile. 553 617 IPR001623 -
Cla08g00652 858 CDD DnaJ 553 606 IPR001623 -
Cla08g00652 858 SUPERFAMILY Chaperone J-domain 547 647 IPR036869 -
Cla08g00652 858 Gene3D DnaJ domain 539 631 IPR036869 -
Cla08g00652 858 SUPERFAMILY Cupredoxins 37 127 IPR008972 -
Cla08g00652 858 MobiDBLite consensus disorder prediction 509 533 - -
Cla08g00652 858 Pfam Protein phosphatase 2C 226 463 IPR001932 -
Cla08g00652 858 ProSitePatterns PPM-type phosphatase domain signature. 256 264 IPR000222 GO:0043169
Cla08g00652 858 Pfam X-domain of DnaJ-containing 710 790 IPR026894 -
Cla08g00652 858 PANTHER ALPHABET, ISOFORM E-RELATED 189 471 - -
Cla08g00652 858 Gene3D - 216 473 IPR036457 -
Cla08g00652 858 PRINTS DnaJ domain signature 609 628 IPR001623 -
Cla08g00652 858 PRINTS DnaJ domain signature 589 609 IPR001623 -
Cla08g00652 858 PRINTS DnaJ domain signature 573 588 IPR001623 -
Cla08g00652 858 PRINTS DnaJ domain signature 555 573 IPR001623 -
Cla08g00652 858 MobiDBLite consensus disorder prediction 787 825 - -
Cla08g00652 858 SUPERFAMILY PP2C-like 222 470 IPR036457 -
Cla08g00652 858 ProSiteProfiles Phytocyanin domain profile. 37 133 IPR003245 GO:0009055
Cla08g00652 858 ProSitePatterns Type-1 copper (blue) proteins signature. 109 125 IPR028871 -
Cla08g00652 858 ProSiteProfiles PPM-type phosphatase domain profile. 225 470 IPR001932 -
Cla08g00652 858 Pfam DnaJ domain 553 614 IPR001623 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00118 Cla-Chr3:1202141 Cla08g00652 Cla-Chr8:18724501 8.90E-40 dispersed
Cla05g00981 Cla-Chr5:9876491 Cla08g00652 Cla-Chr8:18724501 9.48E-30 dispersed
Cla05g01052 Cla-Chr5:10819740 Cla08g00652 Cla-Chr8:18724501 1.64E-36 dispersed
Cla05g01053 Cla-Chr5:10821382 Cla08g00652 Cla-Chr8:18724501 1.02E-37 dispersed
Cla05g01655 Cla-Chr5:28135087 Cla08g00652 Cla-Chr8:18724501 3.93E-119 dispersed
Cla08g00652 Cla-Chr8:18724501 Cla11g01750 Cla-Chr11:31111961 1.01E-54 dispersed
Cla11g01868 Cla-Chr11:32209662 Cla08g00652 Cla-Chr8:18724501 4.21E-25 dispersed
Cla08g00652 Cla-Chr8:18724501 Cla07g00237 Cla-Chr7:2622852 9.08E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00652 K17506 - csv:101220053 526.939