Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00655 ATGGTCAGAACCAAGAGGTGTTCCTTCGTTTCGGCTTCTTTTGGTCTCTGGCTTGTGTTTGGGAAAACTGAATACAACATGCTCAGGCTCAAAACTTATCCACTTATATCGCTGCGAGATAATGAATCTGTAGTTTGTAGGGTTGGGTATTGGGAAGAATGCTCTATGGTAACATCGGGGCCACCCACTCCTATGGGTGGTGGTGCGCAGTCTGTTTCACCCTCACTTCTGCGATCTAATTCTGGATTGCTGGGAGTTCAAGGTGGTCTGCTTCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCCCGGAATCAGTTCAATAATATGAATATGCTTGGTAACATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGGAATGGGGCTCCTAATGCACATCCTGGTGCGGAGCCGGACCCTCTTTCTGGTGTTGGCAACGGAATGAACTTCAATAATCCTTCATCATCCTTTGTAGCATCCAATATGGCAAACCCCGTTTCGTCTGTCCAAGGGCAGAATCCTCAATTTTCTAACCTTTCTAGCAGCCAGTTGTTATCAGATCAGCAGCAGTCGCAACAACTAGAACCCCAGAACTTCCAACATAGTCAGCAGTCTATGGAACAGTTTTCTGCACTTCAGAGCAATCAACAACCACAATTTCAAGCAATGCGAGGGTTGACTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACGAGCAATGATCAACATGGACAGCAGCAGCAGCAGCATTTGCAAACTTTGAGAAACCTTGGTCCAGTGAAATTGGAATCACAACGGCTTCAGTCGATGAGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCAGCAGCAGCAGCAGCAACAACAACATCAACATCAACATCAGCATCAGCATCCACATCAGCAACAACAGCAATCGCAACAATTTCTCCATATGTCTAGACAGTCCTCTCAGGCAGCAGCTGCCCAAATTAATTTAATGCACCAACAAAGGTTTTTGCAATTGCAACAACAACATCAGCAACATCTCCTAAAAAGTATGCCTCCTCAAAGGCCACAATTGCAACAACATTACCAACAGCAGAACCTTTCTCTGAGATCTCCTGTTAAACCAGGATATGAACCTGGAATGTGTGCCCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGATAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAATGGTGTGTGTCCATGTATGGAAGTGGACGACAAACAACAGGAGTTTTTCCTCAGGTCTGCTGCAAGATACATTGTGTCCTTATACTAGATGTATGGCATTGTGAAATATGCAACCGCAAGCCTGGGCGTGGCTTTGAAGCTACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCTTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTCCGCGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTATTGATACCTCAGGTTAGTCACCTTGGAGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCTACTCCTGAATTGCAAAACAATTGTAACATGTACGTCCTGCTTAACATTTGTGTTTCTCAAACCAATACCTATCAGTTTGCTTCTGCCTGTGTGAAAAGTCTGACACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTTCAGATATCTGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCGGGGGTTACAAATCAAGCTCAAATTTCTGATGAGCAGCAACAACAGCAATCATCCATAGCCCAGCACTCGAATAACAACCAGAGTTCTGTCCAGGCTTCTGCGGTGCAGCAGCTTACAGCTAGCAATGGTGTGACCAGTGTAAATAACCCCGCCAACCAACCTTCAACATCAAACTCAGCAAGCACCATTGCTGGTCTTCTTCACCAAAATTCTATGAACTCAAGACAGCAGAACTCTATGGCTAATGCTAGCAACTCATATGGGGGAAGTAATGTTCAGATTCCATCTCCTGGGTCTTCCAGTACAATTCCACCTACGCAACCGAACCCTTCTACATTCCAGCCACCGACTCCCTCATCATCTAACAATCTTTCACAACCATCGCATGCAGCTGCAAAGAATGCCAATCAAATGAGTGCTGCCAATTCTCCGGCAAATATCTCTATGCAACAACCCGCCTTATCTGGAGATGCTGATCCTAGTGATACACAATCCTCAGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCATATGAACGGACCGAATAGTCTGGTTGGTGTCGGTTCGGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAGTACAGGTCTCAACAATGGGAATTGCATGGGCGGAAACGGAGCAACAAACGGTGGCTCAGGGATGGGAGGAGGTGGATATGGATCAATGGGGAGCGGGCTTGGGCAGCCTGCCATGGTTAATGGAATGAGAACTGCAATGGGAAATAACTCCATTATGAATAGACGAATAGGAATGGCATCGTTCGCTCTAGAACAAAGCATGAATGGTCAACCTCAGGATTTGGGAAACCAGCTCCTTAGTGGATTAGGAGCTGTAAATGGCTTTAGCAATCTCCAATTTGACTGGAAGCCATCCCCATGA 2982 44.57 MVRTKRCSFVSASFGLWLVFGKTEYNMLRLKTYPLISLRDNESVVCRVGYWEECSMVTSGPPTPMGGGAQSVSPSLLRSNSGLLGVQGGLLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGAPNAHPGAEPDPLSGVGNGMNFNNPSSSFVASNMANPVSSVQGQNPQFSNLSSSQLLSDQQQSQQLEPQNFQHSQQSMEQFSALQSNQQPQFQAMRGLTGVGPVKLEPQVTSNDQHGQQQQQHLQTLRNLGPVKLESQRLQSMRGLAPVKMEPQQSDQSLFQQQQQQQQHQHQHQHQHPHQQQQQSQQFLHMSRQSSQAAAAQINLMHQQRFLQLQQQHQQHLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQVCCKIHCVLILDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMYVLLNICVSQTNTYQFASACVKSLTRQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVTNQAQISDEQQQQQSSIAQHSNNNQSSVQASAVQQLTASNGVTSVNNPANQPSTSNSASTIAGLLHQNSMNSRQQNSMANASNSYGGSNVQIPSPGSSSTIPPTQPNPSTFQPPTPSSSNNLSQPSHAAAKNANQMSAANSPANISMQQPALSGDADPSDTQSSVQKILQEMMMNNHMNGPNSLVGVGSVVNDMKNVNGVLPTSSTGLNNGNCMGGNGATNGGSGMGGGGYGSMGSGLGQPAMVNGMRTAMGNNSIMNRRIGMASFALEQSMNGQPQDLGNQLLSGLGAVNGFSNLQFDWKPSP 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18793469 18800763 - ClCG08G006370.2 Cla08g00655 278310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00655 993 MobiDBLite consensus disorder prediction 679 722 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 803 826 - -
Cla08g00655 993 PANTHER LIM DOMAIN-BINDING PROTEIN 56 992 IPR029005 -
Cla08g00655 993 MobiDBLite consensus disorder prediction 236 261 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 233 261 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 280 330 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 788 802 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 282 330 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 147 220 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 672 722 - -
Cla08g00655 993 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 56 992 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 127 220 - -
Cla08g00655 993 MobiDBLite consensus disorder prediction 761 787 - -
Cla08g00655 993 Pfam LIM-domain binding protein 391 676 IPR029005 -
Cla08g00655 993 MobiDBLite consensus disorder prediction 761 826 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00855 Cla-Chr5:8471780 Cla08g00655 Cla-Chr8:18793469 1.14E-108 dispersed
Cla08g00284 Cla-Chr8:6122329 Cla08g00655 Cla-Chr8:18793469 0 dispersed
Cla08g00655 Cla-Chr8:18793469 Cla01g00550 Cla-Chr1:6019671 3.25E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00655 - - csv:101218018 1400.19