Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00662 ATGGAGCCTGGGAGAATTAGTCTTGGGTCCGCGTGGTGGTGGCTTTTCGTTGTCCCGTGGGTCGCCACCCACGGGTTCCCACCCCAGGATCTCGTCGGGAGGCTCCCTGGCCAACCAACGGTCGGTTTCAGACAATTTGCAGGTTATGTGGATGTGGATGTGGATGCCGGAAGAAGTTTGTTTTACTACTTTGTTGAAGCTGAGCAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCCAGGTTGCTCTTCAGTTGGCGGGGGTGCCTTTACAGAGTTGGGACCCTTTTATCCTAGAGGTGATGGTCGAGGACTTCGAAGAAACTCCATGTCCTGGAATAAAGCCTCTAATCTCCTGTTTGTGGAGTCTCCTGCTGGGGTAGGATGGTCATACTCAAACACAACTTCTGACTACACTTGTGGCGATGACTCTACTGCTACAGATATGCTCACCTTTATGTTGAAATGGTATGACAAGTTTCCAGCTTTCAGAGATAGGTCTTTTTTCCTCACAGGAGAAAGTTATGCAGGCCATTACATTCCTCAACTAGCTGATGCTATACTGGATTATAACATTCACTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTATTGGGAACCCATTACTTAATCTAGACAGGGATGCACAAGCAACCTACGAGTTCTTTTGGTCTCATGGAATGATTTCCGATGAAGTTTGGCTTGCAATCACCAGAGATTGTGATTTTGATGATTACGTGTTGACAAATCCACACAATGTAACCAAATCCTGCAACGAAGCCATCGCCGACGCCAACGGTATCGTTGGCGAGTACATAAATAACTACGATGTTCTCTTGGATGTCTGCTACCCCTCCCTTGTCGAGCAAGAGCTGAGATTGAAAAAACTGGCAACTAAAATAAGCATGGGAGTTGATGTGTGCATGACTTATGAAAGGCGTTTCTATTTCAATTTACCGGAAGTTCAAAAGGCTCTTCATGCCAATCGTACTAATTTGCCTTATGAATGGTCCATGTGCAGTGACAGCACATTAGACTACAATTACAATGATACAAACATCAACATGCTTCCCTTACTGAAGAGAATAGTCCAAAACCACATCCCACTTTGGATCTTCAGTGGGGATGAAGATTCAGTGGTGCCATTGTTGGGGTCTAGGACACTAGTCCGAGAGTTGGCTCATGACCTTAAATTCAAGGTCACAGTACCCTACGGAGCTTGGTTCCACAAGGGCCAGGTCGGCGGCTGGGCCATCGAGTACGGCAACACCCTAACATTCGCGACGGTGCGCGGAGCATCTCATATGGTACCCTTCGCCCAACCCTCTAGAGCTCTGCATTTGTTCTCTTCATTTATATTATTCCCAATGGCCTCTGCCTCTATCAATAATAGTGAATACTATTACCCTTGGTTTCCTCTACCACCTTATCATCCTTTTCGGCCACCACCCCCCGCCGTAAAGCCACCTCTCCCACCGCCACCACCAAGCAACCCAATTCTCCCTCCTCCGCCACCACGCAACCCAATTCTGCCTCCTCCTCCCCCTCAGAAGCCAACTGCTCCTCCACCCCCACATAAGCCAATTGTGCCTCCTCCACCACCCCAAAATCCAATTACTCCTCCGCCACCACGCAAACCAGTTGTGCCTCCTCCGCCACCTCAAAAACCAACTGCTCCTCCGCCTCCACGCAACCCAATTGGGCCTCCACCAACTGCTCCCCCGCCCCCACGCAAGCCAATTGGGCCTCCTCCGTCACCTCAGAAGCCAACTGCTCCTCCGCCACCACGCAAGCCAATTGCTCCTCCACCACCCAAAAAACCAATTGCACCTCCACCGCCACACAAGCCAATCGCGCCTCCGCCACCTAAAAAACCAGTTGCTCCTCCACCACCGCACAAGCCAATCACTCCTCCGCCACCACACAAACCAATCGCTCCTCCACCACCATACAAGCCAATATCTCCTCCATCACCGACACTACCGCCGCCGCCGCCTCCTCACCACCACCCAACAGTAATCATCATAGTGTTTGTCTCATTAGGCGGGGTGTTCCTGCTTGCATTCATGGCAGCTGCACTCTTCTGTTTCGTGAAAAAGAGAAAAGAGAAAACCATTGAAGAAACAGAGATCATTCACATTGATGAACACAGGAAGATCAAAGAAGCCATAGTTGAAGGACCTCATGGATCCTGCCAAACTGTGGTGCTATCAGTTGAAGATGACATTCACGTCAATGAAGAAATCATAAGGAGCGAGAAGATTGAGGAAAAAGGGTTGCACCGTACGCATGAAGCAGGCGATCCAAGCACCATAGAAGAGCCACAGCCACCATCTTCCACTCATCACCATCTTCATCAAAAGCACTCCTAA 2388 49.71 MEPGRISLGSAWWWLFVVPWVATHGFPPQDLVGRLPGQPTVGFRQFAGYVDVDVDAGRSLFYYFVEAEQDPHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYTCGDDSTATDMLTFMLKWYDKFPAFRDRSFFLTGESYAGHYIPQLADAILDYNIHSKGFKFNIKGVAIGNPLLNLDRDAQATYEFFWSHGMISDEVWLAITRDCDFDDYVLTNPHNVTKSCNEAIADANGIVGEYINNYDVLLDVCYPSLVEQELRLKKLATKISMGVDVCMTYERRFYFNLPEVQKALHANRTNLPYEWSMCSDSTLDYNYNDTNINMLPLLKRIVQNHIPLWIFSGDEDSVVPLLGSRTLVRELAHDLKFKVTVPYGAWFHKGQVGGWAIEYGNTLTFATVRGASHMVPFAQPSRALHLFSSFILFPMASASINNSEYYYPWFPLPPYHPFRPPPPAVKPPLPPPPPSNPILPPPPPRNPILPPPPPQKPTAPPPPHKPIVPPPPPQNPITPPPPRKPVVPPPPPQKPTAPPPPRNPIGPPPTAPPPPRKPIGPPPSPQKPTAPPPPRKPIAPPPPKKPIAPPPPHKPIAPPPPKKPVAPPPPHKPITPPPPHKPIAPPPPYKPISPPSPTLPPPPPPHHHPTVIIIVFVSLGGVFLLAFMAAALFCFVKKRKEKTIEETEIIHIDEHRKIKEAIVEGPHGSCQTVVLSVEDDIHVNEEIIRSEKIEEKGLHRTHEAGDPSTIEEPQPPSSTHHHLHQKHS 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18905283 18911839 - ClCG08G006450.1 Cla08g00662 278317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00662 795 Gene3D - 313 349 - -
Cla08g00662 795 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 460 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Cla08g00662 795 Gene3D alpha/beta hydrolase 28 289 IPR029058 -
Cla08g00662 795 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 PANTHER CARBOXYPEPTIDASE 21 460 - -
Cla08g00662 795 MobiDBLite consensus disorder prediction 759 795 - -
Cla08g00662 795 Gene3D - 361 459 - -
Cla08g00662 795 MobiDBLite consensus disorder prediction 759 774 - -
Cla08g00662 795 MobiDBLite consensus disorder prediction 493 670 - -
Cla08g00662 795 SUPERFAMILY alpha/beta-Hydrolases 34 458 IPR029058 -
Cla08g00662 795 Pfam Serine carboxypeptidase 37 458 IPR001563 GO:0004185|GO:0006508
Cla08g00662 795 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00662 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - csv:101207193 882.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00662 Cla09g00918 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00662 Cla-Chr8:18905283 Cla07g01551 Cla-Chr7:32701809 4.28E-113 dispersed
Cla02g02114 Cla-Chr2:36152052 Cla08g00662 Cla-Chr8:18905283 2.06E-17 transposed
Cla03g01011 Cla-Chr3:19139980 Cla08g00662 Cla-Chr8:18905283 6.04E-11 transposed
Cla06g01779 Cla-Chr6:31222788 Cla08g00662 Cla-Chr8:18905283 1.98E-134 transposed
Cla07g01124 Cla-Chr7:28103595 Cla08g00662 Cla-Chr8:18905283 2.35E-132 transposed
Cla09g00918 Cla-Chr9:9558533 Cla08g00662 Cla-Chr8:18905283 0 transposed
Cla10g01484 Cla-Chr10:30045032 Cla08g00662 Cla-Chr8:18905283 1.76E-60 transposed
Cla10g01595 Cla-Chr10:31419306 Cla08g00662 Cla-Chr8:18905283 4.96E-92 transposed
Cla08g00662 Cla-Chr8:18905283 Cla09g00913 Cla-Chr9:9534831 9.39E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00662 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cla08g00662 Cla_Chr00 FPKM 1.074272 0.98028 2.447063 2.716737 4.806629 7.775955 6.04752 3.744185 4.03676 3.476505
Cla08g00662 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0