Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00663 ATGGTCTTGATTACTGCTCGTAATTCCAGGCTCTCTGCAGTTTCCACTTCACTAATCCTTCCACAAAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCGATTTCCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAAACTCAGAGTCACAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGATGAGATAATGGAAGATGATGACGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTCTATGAAGGGGATGGCAGGGAAGGAGGTGGAATTTCCCTCGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATAGCTGAAGAGGTTATTCTTTCATTTTATGGTGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACGATTGGATCAGGCAGAGCTTGCTAAATCTGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGGCAATGTATGTGAAATACACAAACAATGTAGCTACAGCCAGTTCGTCCTCTGAGAGTGACGGCATTTTCAAGCTTGTGTCGTTCGACATAGAAGCGAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATAGAGAGAAGGCGGGAAAAGGAAGACCTCTTAGCAAAAAGCAAAGAGAGTGGCGTTTAGAGACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA 936 44.44 MVLITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNSESQPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18915243 18918443 - ClCG08G006460.1 Cla08g00663 278318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00663 311 PANTHER OSJNBA0006B20.18 PROTEIN 31 311 - -
Cla08g00663 311 SUPERFAMILY YhbC-like, N-terminal domain 154 216 IPR035956 -
Cla08g00663 311 Pfam RimP N-terminal domain 155 216 IPR028989 -
Cla08g00663 311 Hamap Ribosome maturation factor RimP [rimP]. 133 311 IPR003728 GO:0042274
Cla08g00663 311 PANTHER OSJNBA0006B20.18 PROTEIN 31 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00663 - - - csv:101204078 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02388 Cla-Chr5:35432356 Cla08g00663 Cla-Chr8:18915243 1.29E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1216 Blo01g01787 . . . . . . Bma01g02573 . Cmo15g00630 . . . . Sed03g0457 . Cpe13g00664 Bhi04g01819 Tan11g1188 Cmetu03g1258 . Hepe02g2768 . Lcy10g1314 Cla08g00663 Cam08g1094 Cec08g0679 Cco08g0788 Clacu08g0799 . Cre08g0602 . . . . . . . Cme03g00397 Blo17g00222 . . . . Bpe14g00329 . Bma02g00281 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00523 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013291 0 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00663 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.048954 0.0 0.0
Cla08g00663 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.085537 0.0 0.0