Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00665 ATGGTGCTGATTTCGGTTGTTCGGGATTATATCAACAAAATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTCGATTCTCAGACGGTTAGTGTTGTCAGTGTGGTGTACTCACAGTCGGAGCTTCTTCAAAAAGAAGTCTTTTTGGTTGAATTGGTAGATGCCGTATCGAAGTCTAGGGAATCCATGTATCATCTTAAAGCAGTTTGCTTTCTCAGGCCCACGTCAGAGAATATACAGCTTTTGCGTCGCCAGCTGGCTAATCCTAGATTTGGGGAGTATCACCTTTTTTTCTCCAACATTTTGAAGGAAACTCAGATTCATATACTAGCTGATTCAGACGAGCAGGATGTTGTCCAGCAAGTTGTGGAGTTTTATGGGGATTTCGTGGCCATTGATCCTTATCATTTCACTTTAAATATGCCATCAAACCATATATACATGATCCCAGCAGTTGTTGATCCTCCAAGTTTGCAACATTTCTGTGACCGAGTTGTAGATGGCATTGCAGCACTTTTCTTGGCCTTAAAACAAAGACCTGTTATTAGGTACCAAAGGACATCTGATGTTGCCAAAAGGATAGCACAGGAAACATCGAAACTTATGTACCAGCAAGAAAGTGGTCTGTTTGATTTTCGAAGAATGGAAATTTCCCCTTTGTTACTGGTAATTGATAGGAGGGATGACCCGCTGACTCCCCTACTGAATCAATGGACTTATCAGGCAATGGTTCATGAATTACTAGGTATTCAAGACAATAAAGTGGACTTGAAAAGCATTGGGAAATCTTCAAAGGATCAACAGGAGGTTGTGCTATCATCAGAGCAAGATTCGTTTTATAAAGCCAACATGTACGAGAATTTTGGAGATATTGGAATGAATATAAAGAAGTTGGTGGATGATTTTCAGCAAATTGCCAAAAGTAACCAGAACATACAGACAATAGAGGACATGGCCAAGTTTGTTGACAATTATCCAGAGTACAGAAAAATGCATGGTAATGTTTCAAAACATGTGACGTTGGTGACAGAGATGAGTAAAATAGTTGAGGAGCGAAAGCTTATGTTAGTTTCACAGACAGAACAGGAATTGGCTTGCAATGGTGGACAAGTTGCTGCTTTTGAGGCTGTAACAAATCTTTTGAACAATGAGAGTATTTCTGATATAGACCGTCTGCGGCTAGTTATGTTGTATGCCTTACGGTATGAGAAGGAGAGTCCTGTCCAACTGATGCAGCTTTTCAACAAATTGGCTTCTCGTTCTGCCAAATATAAAACAGGGCTTGTCCAGTTTCTTTTAAAACAAGCTGGTGTTGATAAGCGAACGGGTGATCTTTATGGAAATCGAGATCTTTTGAATATTGCTCGTAACATGGCTCGTGGATTAAAGGGGGTTGAGAACGTATACACTCAGCACCAACCTCTTCTGGTCCAGACCATGGAAAGTATAATCAAGGGACGATTGAGAGATGTGGACTACCCGTTTGTTGGGAATCACTTTCAGCAAGGAAGGCCACAAGAAGTCATCATTTTCATTGTAGGTGGGACGACATATGAGGAGTCACGTGCTGTAGCTTTACAAAACGCAACTACTTCTGGAATACGTTTTATCCTAGGTGGTTCTGTGGTTCTAAATTCTAGGAGGTTTTTGAAGGACTTGGAAGAAGCTCAGCGGATATCTCGTTCGACTAAAGACGGCAAACTTCTTCCCGTAACAGCCCATCGGCGCCCTCCGCCTCACCTGTGGGCCCCGGGGGTTGCCTTCAATCAACGGCTGAAATTCTACTGTATTCTTTGCTTTCTCACCGACTCCGTCACTTTAGTCGTTTCAATTTCCTTCTACTTCGTGAACCACGTTTCCAGTTGCCGAAGCAACTTCCGATTTCCTCATCTCTGTTCACCTCCACCTTACCGGCGCCTGATTTTCCCTCCGTCTCCCAAAATATTAATCGGTTTATCACTCGAACTTCACACGGGAAAATCTCCTCCGCAGTTTTGCTTGATGGGATGGAGGGTGTTTTTCTACACTCTGTTTATTCTCTTCAATATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTACTGAATTTAAGCAGTGAAGCAGCACCTAACTTCAGCTGGACAATTATCAGTGCTGGTGTATTCGTCCTTGTTGCACTTGTTCTTTCCACGTTTCTCATCATTGAACATTTAGCTTCTTATAATCAACCAGAGGAACAAAAGTTTTTGATTGGTCTGATATTGATGGTTCCTGTTTACTCTCTAGAATCGGGCTCCCTAATGGGATCTTTTGCTGGAAAAAGGAAAAGGAAGTTCCTGTCATTGTTAAATTCAAATGGTGCATTCAACTGTGAAGTGATACGGGACTGCTATGAGGCATTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAGAAACGTACACTTGAATTCATGGAAAGTCAGACTGTTGTTAACTCTTGCACACCTCTTTTGGCGGAAAAATATGCATATGGGGTTGTAGAACATCCTTTTCCCTTAAATTGCTTCATAAGGGATTGGTATCTTGGTTCTGACTTCTATCATGCGGTGAAAATTGGTATTGTTCAATATATGATATTGAAGATGATATGTGCGCTCCTAGCAATGATTCTTGAAAGTTTCGGGGTCTATGGAGAAGGAAAGTTCGAGTGGAGATATGGTTATCCCTATTTGGCGGTTGTACTTAATTTTAGTCAGTCGTGGGCCCTATATTGCCTTCTCCAATTCTATTCTGTCACGAAGGACAAATTGGAATCAATTAAACCATTGGCAAAGTTTCTTGTGGTCAAGTCAATCGTTTTCCTCACTTGGTGGCAAGGTGTTGCCGTTGCCTTTCTTTTCTCAATAGGAGCTTTTAAAGGGTCCTTGGCTCGGGAGCTAAAGACACGCATACAAGATTATCTGATATGTATTGAGATGGGTATTGCAGCCGTTGCACATGTTTACACCTTTCCAGCAGTACCTTATAAACGTGGAGAAAGATGTGTTCGTAACGTTGCGGTGCTGTCTGACTACGCGTCCCTAGGAACGCCACCAGATCCAGAGGAGGTTAGAGACTCTGAACGAAGAACTAAAATACGCTTGGGTCGTCAAGATGAGAGAGAGAAGCGTTTGAATTTTCCTCAAAGTGTTCGAGATGTTGTCATTGGAAGCGGTGAAATTATTGTTGATGACATGAAGTATACAGTCACACACGTAGTAGAACCAGTTGAAAGGGGGATTGCAAAACTTAACAAAACGATCCATCGGTTCTCTGAAAACGTTAAACGGCATGAAGAGCAACGGAAGAGTGCCAAGGATGACAGCCATCTGATTCCTTTGAATTCCTGGTCAAAAGAATTTTCTGAAGTCGAAGAAAATCTTACCCAAGGCAGCGTAAGTGACAGTGGAATCTCCAATGGTAAGAGACAACATTTCCAATCAAAAACCACAACTTCTGGAATTAGAATTGGCAGATAA 3501 41.99 MVLISVVRDYINKMLQDISGMKVLILDSQTVSVVSVVYSQSELLQKEVFLVELVDAVSKSRESMYHLKAVCFLRPTSENIQLLRRQLANPRFGEYHLFFSNILKETQIHILADSDEQDVVQQVVEFYGDFVAIDPYHFTLNMPSNHIYMIPAVVDPPSLQHFCDRVVDGIAALFLALKQRPVIRYQRTSDVAKRIAQETSKLMYQQESGLFDFRRMEISPLLLVIDRRDDPLTPLLNQWTYQAMVHELLGIQDNKVDLKSIGKSSKDQQEVVLSSEQDSFYKANMYENFGDIGMNIKKLVDDFQQIAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLNNESISDIDRLRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKTGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLVQTMESIIKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRAVALQNATTSGIRFILGGSVVLNSRRFLKDLEEAQRISRSTKDGKLLPVTAHRRPPPHLWAPGVAFNQRLKFYCILCFLTDSVTLVVSISFYFVNHVSSCRSNFRFPHLCSPPPYRRLIFPPSPKILIGLSLELHTGKSPPQFCLMGWRVFFYTLFILFNMVESSSRSGKMWLLNLSSEAAPNFSWTIISAGVFVLVALVLSTFLIIEHLASYNQPEEQKFLIGLILMVPVYSLESGSLMGSFAGKRKRKFLSLLNSNGAFNCEVIRDCYEAFALYCFERYLIACLGGEKRTLEFMESQTVVNSCTPLLAEKYAYGVVEHPFPLNCFIRDWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFEWRYGYPYLAVVLNFSQSWALYCLLQFYSVTKDKLESIKPLAKFLVVKSIVFLTWWQGVAVAFLFSIGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVAVLSDYASLGTPPDPEEVRDSERRTKIRLGRQDEREKRLNFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGIAKLNKTIHRFSENVKRHEEQRKSAKDDSHLIPLNSWSKEFSEVEENLTQGSVSDSGISNGKRQHFQSKTTTSGIRIGR 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18931191 18946535 + ClCG08G006480.2 Cla08g00665 278320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00665 1166 Coils Coil 1088 1115 - -
Cla08g00665 1166 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Cla08g00665 1166 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Cla08g00665 1166 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Cla08g00665 1166 Gene3D - 353 474 - -
Cla08g00665 1166 Pfam Organic solute transporter Ostalpha 711 1003 IPR005178 -
Cla08g00665 1166 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Cla08g00665 1166 Gene3D - 138 555 IPR027482 -
Cla08g00665 1166 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Cla08g00665 1166 MobiDBLite consensus disorder prediction 1135 1166 - -
Cla08g00665 1166 Gene3D - 3 128 IPR043154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00665 K12479 VPS45; vacuolar protein sorting-associated protein 45 - csv:101203589 1061.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00356 Cla-Chr2:3469473 Cla08g00665 Cla-Chr8:18931191 9.43E-150 dispersed
Cla05g02164 Cla-Chr5:33217596 Cla08g00665 Cla-Chr8:18931191 6.32E-06 dispersed
Cla06g01003 Cla-Chr6:21054659 Cla08g00665 Cla-Chr8:18931191 2.25E-24 dispersed
Cla06g01008 Cla-Chr6:21195370 Cla08g00665 Cla-Chr8:18931191 7.76E-12 dispersed
Cla08g00665 Cla-Chr8:18931191 Cla11g00127 Cla-Chr11:1630585 2.51E-99 dispersed
Cla08g00665 Cla-Chr8:18931191 Cla11g01800 Cla-Chr11:31654095 1.51E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00665 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0