Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00676 ATGGAAACCAGGCTCTCCGCCGCTCTCGGCCTTCCCTCGCCGGATGCCGTTTGTTATCCTTCTCTTTTTGAATTCCCCACTCTTTTCTCCAACTTCGATTCACTTCTCGCCGGAAATAGAGCCCCCAAAGATCGGAATCACTTCCAATACTCTCCTCTTCCGTTTTCTTCATTATCCTTATCCACGGAGGAGCAAGTTTTCACCCCCAAATCCCCCAACTGGGTCAAACCCGTCTCGAAAAGCACCCCCAAAATCCAATCCCTTATGAAGAATTTGTCCGTCCTCGAACGGGCAGTCGTCGGCGCCGCTGGCGGCGCCATGGCCGGCGCCTTCACTTATGTATGTCTTCTTCCACTTGACACCATTAAAACCAGGCTTCAGGCAAAAGGGGCTTCGCAGATTTACAAGAACACATTCGACGCTGTCGTCAAGACCTTTCAATCCAGAGGGATTCTCGGGTTTTACAGCGGCGTTTCGGCAGTAATCGTCGGCTCGGCGGCTTCTTCGGCCGTTTATTTTGGAACCTGTGAATTTGGGAAGTCGATTTTGTCGAAATTTGATTACCCTTCTCTGCTTATACCTCCAACTGCTGGGGCTATGGGAAATATCATCTCTTCGGCTGTAATGGTGCCGAAGGAGTTAATTACTCAGAGAATGCAGGTTGGGGCTAAAGGGAGGTCTTGGGAGGTTTTGATTCAGATTTTGGAGAAAGACGGTATAATGGGTCTTTATGCTGGATATTTTGCTACATTGCTTCGGAATTTACCAGCTGGGGTTTTGAGTTACTCTTCGTTTGAGTATTTGAAAGCTGCTGTTCTAAGCAAGACGAAGAGTAACAAACTAGAACCGCTTCAGAGTGTTTGTTGTGGAGCACTGGCAGGTGCTATATCAGCTACTCTTACAACACCTCTTGATGTAGTGAAGACACGGTTGATGACTCAAGTTCATGGGGAGGCTGCAAACAAAGTTTCAGCTGCAATGTACAGTGGAGTGTCAGCTACAATTAGGCAAATAATGCAGGAAGAGGGGTGGATTGGATTAACCCGTGGGATGGGTCCTAGAGTTCTTCACAGTGCCTGCTTTGCAGCGATTGGCTACTTCGCTTTCGAGACTGCGAAACTTGCCATTTTGGATCATTATCTTAGACAGAAGGAGGCTTCGGAATTGGCTTCTGCTTCAACTTGA 1185 47.93 METRLSAALGLPSPDAVCYPSLFEFPTLFSNFDSLLAGNRAPKDRNHFQYSPLPFSSLSLSTEEQVFTPKSPNWVKPVSKSTPKIQSLMKNLSVLERAVVGAAGGAMAGAFTYVCLLPLDTIKTRLQAKGASQIYKNTFDAVVKTFQSRGILGFYSGVSAVIVGSAASSAVYFGTCEFGKSILSKFDYPSLLIPPTAGAMGNIISSAVMVPKELITQRMQVGAKGRSWEVLIQILEKDGIMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLSKTKSNKLEPLQSVCCGALAGAISATLTTPLDVVKTRLMTQVHGEAANKVSAAMYSGVSATIRQIMQEEGWIGLTRGMGPRVLHSACFAAIGYFAFETAKLAILDHYLRQKEASELASAST 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19028997 19030181 - ClCG08G006600.1 Cla08g00676 278331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00676 394 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 20 390 - -
Cla08g00676 394 Pfam Mitochondrial carrier protein 102 185 IPR018108 -
Cla08g00676 394 Pfam Mitochondrial carrier protein 281 377 IPR018108 -
Cla08g00676 394 Pfam Mitochondrial carrier protein 196 273 IPR018108 -
Cla08g00676 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 182 IPR018108 -
Cla08g00676 394 Gene3D Mitochondrial carrier domain 226 394 IPR023395 -
Cla08g00676 394 SUPERFAMILY Mitochondrial carrier 99 370 IPR023395 -
Cla08g00676 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 189 271 IPR018108 -
Cla08g00676 394 Gene3D Mitochondrial carrier domain 53 225 IPR023395 -
Cla08g00676 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 281 375 IPR018108 -
Cla08g00676 394 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 20 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00676 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:116404632 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00261 Cla-Chr1:2662225 Cla08g00676 Cla-Chr8:19028997 3.50E-34 dispersed
Cla08g00676 Cla-Chr8:19028997 Cla06g01542 Cla-Chr6:28998557 2.69E-33 dispersed
Cla08g00676 Cla-Chr8:19028997 Cla08g00747 Cla-Chr8:19756856 8.40E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00676 Cla_Chr08 FPKM 13.554115 14.244493 16.987173 17.316725 15.405776 13.603205 15.66965 23.49313 22.497179 23.682692