Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00677 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGTTGAACAATCTGTTATGGATTGAACAATCTGCACTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGCAGTGATGATTCACGGATCAGCCGAGAAAGTAAGCTTGATCAGAATGCGATTTAGGGGAATTCTAGATGAATCTTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGAAGTTTGAAGTTAGCGTCAATCTCACAAATTATACCTGGACAAAGAACCGCTGTCTTCGAACGGTATCTTCGTCCTGAAAAAGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGGATAAAGTTGAGGCAGAGGCTTGGATTTCAGGCCTGAAAGCTTTAATAGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGAAAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCACACAGCGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTTAGTTTCAACGCAAATATATCTCTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTAAACCAAACAAATATGCAAGTAAAGGGGTCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCTGCACCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGCGAGATTGTTGGGGACAATATAGTGAAGATTGGGGCTGAAAAAAATAGTAGTTACGTGACCCTGAGGACGGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGGGTTAGGCATGCTGCCCTAGTGACAAGGCAAGGGGAAGTTTTTACATGGGGTGAGGAATCTGGAGGTCGCCTTGGCCATGGTGTGGTGAAAGATGTAACTCAGCCTCGTATGGTTGAATCCTTGGCAGCTAGTAGTATTGATTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAACCGGGGAACTTTATACATGGGGTGATGGTACCCACAACGCAGGACTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTTTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTCTGGTAACGTCGACAGGTCAGCTTTTTACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCGGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCCTTTCATCAGGTAAACTTTTTACATGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGGCTTAAACCCACATGTGTGCCAGCACTAATTGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATTACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCTATGGGAAGTACTGTTTATGGACAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGGAGATTGGGCCATGGTGATGTTGAAGATCGGAAGACACCAACTTTGGTAGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGGCAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGGGCAGCACTTGCTCCAAATCCCGGCAAACTATATCGTGTATGTGATTCATGTTATGCAAAATTGATTAAGGCAGCAGATGCTATTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAGGATAGGATTGATAAGACTGATCTGAAAATATCGAAGTCAGTTCCTTCCAACATGGATTTGATAAAGCAATTAGACAACAAAGCAGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTCCGATCCTCTCAAGCACCTTCACTATTGCAGCTCAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTCCTCACTGCTTCTGGAGTAAGTTCTAGATCTGTGTCGCCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCCACTCCTGTTCCTACAGCATCTGGACTTTCCTTTTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAACGACCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAAAGGTTACCACCTGGAGTATATGACGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGCGGCTACCATTTGGGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGTAGCTACTCCTGTGCATCTCCAACGGCATCTGAAGCTGCTGCTTGGCAAGGAAGCTATGGCACAACTCATTCATATAGGGAGCTTTCTGGAACGAATGAAAGCACTTTGCAACAAGATAGAATTGACAATCGAGATTCTAGACTTCTAAATAGCGGAGGGGCTCAGCCAGTTAGTAGTAGTGCATCAGTGGCAGCTGTTGGTAAGGAGTCTGAGTCCTTACAAGATGGTGACAATAATTCTAAAGCCAAAACTTCTCTAATGGTTAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATACGAGAGATATAATGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGACGTCACAGAGAGCAGACGATGCAGTTTCAATAGCTTCCCAACAACTATAG 3453 43.56 MADPFSYANADRDIEQLNNLLWIEQSALIALKKGAQLLKYGRKGKPKFCPFRLSSAVMIHGSAEKVSLIRMRFRGILDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDESCELTSNSPSDSSHSVNRDNSSPEVFVSFNANISLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVTQPRMVESLAASSIDFVACGEFHTCAVTITGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSTGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSLSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYAKLIKAADAINNNRKNAMPRLSGENKDRIDKTDLKISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVLKLRSQVESLRQKCELQELELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGGYHLGMNGERHSRSDSVSSYSCASPTASEAAAWQGSYGTTHSYRELSGTNESTLQQDRIDNRDSRLLNSGGAQPVSSSASVAAVGKESESLQDGDNNSKAKTSLMVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSSDKSSVSGLTSQRADDAVSIASQQL 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19059591 19068956 + ClCG08G006620.1 Cla08g00677 278332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Cla08g00677 1150 Coils Coil 910 930 - -
Cla08g00677 1150 SMART fyve_4 654 722 IPR000306 GO:0046872
Cla08g00677 1150 Gene3D - 22 158 IPR011993 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 498 545 IPR000408 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 550 599 IPR000408 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Cla08g00677 1150 Pfam Regulator of chromosome condensation (RCC1) repeat 381 431 IPR000408 -
Cla08g00677 1150 Pfam Transcription factor regulating root and shoot growth via Pin3 1066 1121 IPR013591 -
Cla08g00677 1150 SUPERFAMILY PH domain-like 27 152 - -
Cla08g00677 1150 Pfam Transcription factor BRX N-terminal domain 905 940 IPR027988 -
Cla08g00677 1150 MobiDBLite consensus disorder prediction 1020 1039 - -
Cla08g00677 1150 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Cla08g00677 1150 Gene3D - 492 667 IPR009091 -
Cla08g00677 1150 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Cla08g00677 1150 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 26 1129 - -
Cla08g00677 1150 MobiDBLite consensus disorder prediction 815 832 - -
Cla08g00677 1150 MobiDBLite consensus disorder prediction 955 975 - -
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Cla08g00677 1150 MobiDBLite consensus disorder prediction 815 845 - -
Cla08g00677 1150 Gene3D - 200 491 IPR009091 -
Cla08g00677 1150 ProSiteProfiles BRX domain profile. 1067 1122 IPR013591 -
Cla08g00677 1150 Coils Coil 861 895 - -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Cla08g00677 1150 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Cla08g00677 1150 SUPERFAMILY FYVE/PHD zinc finger 655 731 IPR011011 -
Cla08g00677 1150 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Cla08g00677 1150 MobiDBLite consensus disorder prediction 1018 1053 - -
Cla08g00677 1150 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 26 1129 - -
Cla08g00677 1150 CDD PH_PLC_plant-like 27 153 - -
Cla08g00677 1150 Pfam FYVE zinc finger 655 720 IPR000306 GO:0046872
Cla08g00677 1150 SUPERFAMILY RCC1/BLIP-II 266 656 IPR009091 -
Cla08g00677 1150 CDD FYVE_like_SF 664 717 - -
Cla08g00677 1150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 727 IPR013083 -
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Cla08g00677 1150 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Cla08g00677 1150 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00677 - - - csv:116404564 2066.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00677 Cla09g00924 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02221 Cla-Chr2:37363282 Cla08g00677 Cla-Chr8:19059591 0 dispersed
Cla03g01218 Cla-Chr3:25969879 Cla08g00677 Cla-Chr8:19059591 0 dispersed
Cla08g00677 Cla-Chr8:19059591 Cla11g00896 Cla-Chr11:15250279 2.92E-16 dispersed
Cla09g00081 Cla-Chr9:798235 Cla08g00677 Cla-Chr8:19059591 1.02E-15 dispersed
Cla07g00805 Cla-Chr7:22494149 Cla08g00677 Cla-Chr8:19059591 3.01E-08 transposed
Cla10g01306 Cla-Chr10:28000479 Cla08g00677 Cla-Chr8:19059591 0 transposed
Cla11g01661 Cla-Chr11:30238073 Cla08g00677 Cla-Chr8:19059591 8.34E-25 transposed
Cla08g00677 Cla-Chr8:19059591 Cla09g00924 Cla-Chr9:9632854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00677 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.186987 0.0 0.0 0.0 0.0