Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00702 ATGGCGGATATGGATTTTGTTGAAGGCGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTCGCTGGCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGTTAGTTGAGTGTGGGCATGAGGAGGCTGTTTCTAATCCCCAATTTCGCGAGAACTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACACCAAAAGCTTCTTTCCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGGTAGAACTTCCTAATATCAGAGGAAAAAAACTGAGGATGGCGCATTGCTACAGACTGCATCAAATGGCCATTGGTGGCACCTGGAGGGTTAAGCCATTTGGTTCAGGAGGAGTGAGAGATTTTTTGAAAATCAACATGGGGATGTTGACGATAGTTGGATTTTTAATACACATAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTCTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGACTTCCACTGTCACACAAGAGAACTCGAGGAAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTAGAAAAAACTCAAAGGCCATGGATAGGAGGGCGGGTAATATTGCACATGTTCTGGTACACGAAGTGATATTTTCAACGATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTACTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTCAAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGATCATGGTCTGGTTCTTCACATTCTCATCCAGCGGTCAAGAAAACATTAGACGCCCAGGAAAAATCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTACCATGGATTTTATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGAAGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCACAAAAATGTAGTTCGTTTTATAGGTGCGTGTACAAACTCTCCGCACTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTGAAGCTCTCACAACTTCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGAATACTTACATTTAAATAACATTATCCATAGAGACTTGAAGACGGCAAATCTGCTAATGGACACTCAACATGTTGTAAAGGTGGCAGATTTTGGAGTTGCGCGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGTTGTGGGAACTAGTAACAGCAAAGGGACTACGTCCAGATCTTCCCAAAAACGTTCACCCCAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCCATAAATCGACCTCCATTTACCGAGATAAAAGTTGAACTCGAAAATCTCCTAGAAGAAGTTGAGATGTGTACAAAATATGAAGAAAATTGTGCGGCAGTTAATGGCAGCTAA 1782 41.25 MADMDFVEGVGESSSPPRSFAGFCAVHDVRNDVYTRLVECGHEEAVSNPQFRENLDAHFNRLPPSYGLDVNMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEVELPNIRGKKLRMAHCYRLHQMAIGGTWRVKPFGSGGVRDFLKINMGMLTIVGFLIHISTKSDGNDDHVFLDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAMDRRAGNIAHVLVHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVKETDGLYEAMEKAVARYEGSWSGSSHSHPAVKKTLDAQEKSADWEIDRRLLKIGERIASGSCGDLYHGFYLGQDVAVKILRSEDLNDDLEEEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMEYLHLNNIIHRDLKTANLLMDTQHVVKVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKGLRPDLPKNVHPKLLDLMQRCWDAEPINRPPFTEIKVELENLLEEVEMCTKYEENCAAVNGS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19267285 19280659 - ClCG08G006880.2 Cla08g00702 278357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00702 593 Gene3D Transferase(Phosphotransferase) domain 1 418 591 - -
Cla08g00702 593 ProSiteProfiles ACT domain profile. 239 313 IPR002912 -
Cla08g00702 593 SMART serkin_6 340 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00702 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Cla08g00702 593 ProSiteProfiles Protein kinase domain profile. 340 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00702 593 Gene3D Phosphorylase Kinase; domain 1 327 417 - -
Cla08g00702 593 Coils Coil 375 395 - -
Cla08g00702 593 PRINTS Tyrosine kinase catalytic domain signature 451 469 IPR001245 GO:0004672|GO:0006468
Cla08g00702 593 PRINTS Tyrosine kinase catalytic domain signature 515 537 IPR001245 GO:0004672|GO:0006468
Cla08g00702 593 PRINTS Tyrosine kinase catalytic domain signature 414 427 IPR001245 GO:0004672|GO:0006468
Cla08g00702 593 PRINTS Tyrosine kinase catalytic domain signature 496 506 IPR001245 GO:0004672|GO:0006468
Cla08g00702 593 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 111 - -
Cla08g00702 593 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 183 581 - -
Cla08g00702 593 SUPERFAMILY ACT-like 238 307 IPR045865 -
Cla08g00702 593 SUPERFAMILY Protein kinase-like (PK-like) 327 567 IPR011009 -
Cla08g00702 593 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 111 - -
Cla08g00702 593 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 183 581 - -
Cla08g00702 593 CDD STKc_MAP3K-like 346 566 - -
Cla08g00702 593 Pfam Protein tyrosine and serine/threonine kinase 340 529 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00702 - - - csv:101216231 811.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00702 Cla-Chr8:19267285 Cla10g00044 Cla-Chr10:506616 1.51E-116 dispersed
Cla08g00702 Cla-Chr8:19267285 Cla01g01294 Cla-Chr1:26249281 2.30E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80734 PF07714 PK_Tyr_Ser-Thr 2.70E-57 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00702 Cla_Chr08 FPKM 4.711911 5.051386 3.429822 2.691374 14.306341 16.278149 15.166961 0.616399 0.49686 0.635661