Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00706 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTCCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAACTCGAGGTCCCCTGAAGACGTCTCTGACACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGACTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTAATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGTCTTTTGGGTGGGCTGTAGCTATCAAGTGGACTTGTTTTGCTGATGGAGAACTGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTAGAGGAGTGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGGGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA 1095 51.96 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSDTKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEANSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQSFGWAVAIKWTCFADGELRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIRGVLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19322985 19324977 - ClCG08G006930.1 Cla08g00706 278361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00706 364 Coils Coil 258 278 - -
Cla08g00706 364 Pfam bZIP transcription factor 189 234 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 Gene3D - 188 240 - -
Cla08g00706 364 CDD bZIP_plant_RF2 190 237 IPR044759 GO:0003700|GO:0006355
Cla08g00706 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 350 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 1 37 - -
Cla08g00706 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 237 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 SUPERFAMILY Leucine zipper domain 189 238 IPR046347 GO:0003700|GO:0006355
Cla08g00706 364 MobiDBLite consensus disorder prediction 61 106 - -
Cla08g00706 364 SMART brlzneu 185 274 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 Coils Coil 212 232 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 334 364 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 75 89 - -
Cla08g00706 364 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 6 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00777 Cla-Chr5:7452353 Cla08g00706 Cla-Chr8:19322985 2.71E-52 dispersed
Cla06g01054 Cla-Chr6:22935734 Cla08g00706 Cla-Chr8:19322985 1.97E-18 dispersed
Cla07g00481 Cla-Chr7:6801918 Cla08g00706 Cla-Chr8:19322985 3.51E-58 dispersed
Cla08g00706 Cla-Chr8:19322985 Cla09g00904 Cla-Chr9:9382833 3.47E-88 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61538 PF00170 bZIP_1 7.30E-08 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00706 K20557 - csv:101215277 483.796