Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00706 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTCCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAACTCGAGGTCCCCTGAAGACGTCTCTGACACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGACTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTAATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGTCTTTTGGGTGGGCTGTAGCTATCAAGTGGACTTGTTTTGCTGATGGAGAACTGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTAGAGGAGTGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGGGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA 1095 51.96 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSDTKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEANSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQSFGWAVAIKWTCFADGELRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIRGVLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19322985 19324977 - ClCG08G006930.1 Cla08g00706 278361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00706 364 Coils Coil 258 278 - -
Cla08g00706 364 Pfam bZIP transcription factor 189 234 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 Gene3D - 188 240 - -
Cla08g00706 364 CDD bZIP_plant_RF2 190 237 IPR044759 GO:0003700|GO:0006355
Cla08g00706 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 350 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 1 37 - -
Cla08g00706 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 237 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 SUPERFAMILY Leucine zipper domain 189 238 IPR046347 GO:0003700|GO:0006355
Cla08g00706 364 MobiDBLite consensus disorder prediction 61 106 - -
Cla08g00706 364 SMART brlzneu 185 274 IPR004827 GO:0003700|GO:0006355
Cla08g00706 364 Coils Coil 212 232 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 334 364 - -
Cla08g00706 364 MobiDBLite consensus disorder prediction 75 89 - -
Cla08g00706 364 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 6 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00706 K20557 VIP1; transcription factor VIP1 - csv:101215277 483.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00777 Cla-Chr5:7452353 Cla08g00706 Cla-Chr8:19322985 2.71E-52 dispersed
Cla06g01054 Cla-Chr6:22935734 Cla08g00706 Cla-Chr8:19322985 1.97E-18 dispersed
Cla07g00481 Cla-Chr7:6801918 Cla08g00706 Cla-Chr8:19322985 3.51E-58 dispersed
Cla08g00706 Cla-Chr8:19322985 Cla09g00904 Cla-Chr9:9382833 3.47E-88 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001960 2 2 1 0 1 2 3 2 2 2 2 2 3 2 2 4 2 3 3 2 3 2 1 2 2 2 2 5 4 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61538 PF00170 bZIP_1 7.30E-08 CL0018 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00706 Cla_Chr08 FPKM 18.507338 16.605108 66.166618 62.806931 570.476868 608.536011 552.379639 53.203663 53.721611 43.497593