Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00706 | ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTCCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAACTCGAGGTCCCCTGAAGACGTCTCTGACACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGACTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTAATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGTCTTTTGGGTGGGCTGTAGCTATCAAGTGGACTTGTTTTGCTGATGGAGAACTGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTAGAGGAGTGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGGGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA | 1095 | 51.96 | MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSDTKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEANSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQSFGWAVAIKWTCFADGELRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIRGVLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19322985 | 19324977 | - | ClCG08G006930.1 | Cla08g00706 | 278361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00706 | 364 | Coils | Coil | 258 | 278 | - | - | |
Cla08g00706 | 364 | Pfam | bZIP transcription factor | 189 | 234 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g00706 | 364 | Gene3D | - | 188 | 240 | - | - | |
Cla08g00706 | 364 | CDD | bZIP_plant_RF2 | 190 | 237 | IPR044759 | GO:0003700|GO:0006355 | |
Cla08g00706 | 364 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 6 | 350 | - | - | |
Cla08g00706 | 364 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cla08g00706 | 364 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 187 | 237 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g00706 | 364 | SUPERFAMILY | Leucine zipper domain | 189 | 238 | IPR046347 | GO:0003700|GO:0006355 | |
Cla08g00706 | 364 | MobiDBLite | consensus disorder prediction | 61 | 106 | - | - | |
Cla08g00706 | 364 | SMART | brlzneu | 185 | 274 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g00706 | 364 | Coils | Coil | 212 | 232 | - | - | |
Cla08g00706 | 364 | MobiDBLite | consensus disorder prediction | 334 | 364 | - | - | |
Cla08g00706 | 364 | MobiDBLite | consensus disorder prediction | 75 | 89 | - | - | |
Cla08g00706 | 364 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 6 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00777 | Cla-Chr5:7452353 | Cla08g00706 | Cla-Chr8:19322985 | 2.71E-52 | dispersed | |
Cla06g01054 | Cla-Chr6:22935734 | Cla08g00706 | Cla-Chr8:19322985 | 1.97E-18 | dispersed | |
Cla07g00481 | Cla-Chr7:6801918 | Cla08g00706 | Cla-Chr8:19322985 | 3.51E-58 | dispersed | |
Cla08g00706 | Cla-Chr8:19322985 | Cla09g00904 | Cla-Chr9:9382833 | 3.47E-88 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61538 | PF00170 | bZIP_1 | 7.30E-08 | CL0018 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00706 | K20557 | - | csv:101215277 | 483.796 |