Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00710 ATGGAAGGGAATTTATCACAAGGAGGCTTGATTCCAGGAGGGACTTCTTATGGAGGTCTTGATTTGCAAGGACCGTTTAAGGTTCATAATCAGGGCCAGCACTCTCATGCCTTACACCAGCAGCATCATCCTCATACTCGTCAGGGATCTTCAGCTAATCCTTCCATTCAGGAGGGATTTTCACTTTCCATGGGAGTTGTACAAAATTGTGACCATACCATGTCTTTGGTAGAGTACAACAAGGGAGAAAGGTGTAAAAACTCAGCTAGCGACGAAGAGCCGAGTTTTACTGAGGATGGTATTGATGGTCATAATGAGAATAGTAAGGGGAAGAAGGGATCGATGTGGCATCGGGTGAAATGGACGGATAAAATGGTGAAGCTTTTGATTACTGCAGTGTCTTATATAGGAGATGATATTGCTTCAGATCTTGATGGGGGTGGAAGAAGGAAATGCCAAATTATACAGAAGAAAGGTAAATGGAAACTGATATCAAAGGTCATTGCTGAAAGGGGTTATCAAGTTTCACCCCAGCAGTGTGAGGATAAATTTAATGACCTCAATAAGAGGTACAAGAGGCTTAACGATATAATTGGGAGAGGTACTTCTTGTCAGGTTGTTGAGAACCCAGCACTTCTTGATGTCATTGATTATTTAACAGACAAAGAGAAGGATGATGTGAGGAAAATCTTAAACTCAAAGCAACTGTTCTATGAGGAGATGTGTTCTTATCATAATTCAAATCGACTTCATCTGCCCCATGATCCTGCTTTGCAGCGTTCTTTGCAGCTGGCTTTTAGAGCAAGGGAAGATCACGATAATGACGAGCCAAGGAGACATCAAAATGATGATTTTGATGAAAACGAAAATGGTGAAACTGATGAACACGATGATTTTGAGGAGAATTTTGTACCCCATGTGGACAATAGGCGATCACTTGGGGTATTAGGAGGGTCAGTGAAGAGGCTAAAACGAGGCCAAGACCATGAAGATGCAGCTCATGCTTGTGGCAATTCCTTGAGTCCTCTTGATTGCAACAAAAGTTTTCATGCTCACTCACAAGCACAATTTGGTCAAGCCGATATAGCTCATTTAGAAACTGAAAGTATAAAAGCTTCTACATCGCAAAAGCAGTGGATGGAGCTTCGCCTACTTCAATTGGAAGAGCAGAAGCTTCAAATTCAAGTTGAAATGTTGGAACTGGAGAAACAGAAGTTCAAGTGGGATAGATTTAACAAGAAAAAGGACCGTCACATTGCAATGGCAAAGGTGGAGAAGGGGGAAATACTTGGGGATGGTTCTGTTGGTGCTTTATTTACTGTTTATCCAGGTAGGATGAAGGATCACCCCACAAGCATTTCTAGCAGTCTTTTCAGCACCATGGTTGGAAAACATCATTGA 1401 41.83 MEGNLSQGGLIPGGTSYGGLDLQGPFKVHNQGQHSHALHQQHHPHTRQGSSANPSIQEGFSLSMGVVQNCDHTMSLVEYNKGERCKNSASDEEPSFTEDGIDGHNENSKGKKGSMWHRVKWTDKMVKLLITAVSYIGDDIASDLDGGGRRKCQIIQKKGKWKLISKVIAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGTSCQVVENPALLDVIDYLTDKEKDDVRKILNSKQLFYEEMCSYHNSNRLHLPHDPALQRSLQLAFRAREDHDNDEPRRHQNDDFDENENGETDEHDDFEENFVPHVDNRRSLGVLGGSVKRLKRGQDHEDAAHACGNSLSPLDCNKSFHAHSQAQFGQADIAHLETESIKASTSQKQWMELRLLQLEEQKLQIQVEMLELEKQKFKWDRFNKKKDRHIAMAKVEKGEILGDGSVGALFTVYPGRMKDHPTSISSSLFSTMVGKHH 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19367246 19370553 + ClCG08G006970.2 Cla08g00710 278365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00710 466 Coils Coil 382 404 - -
Cla08g00710 466 MobiDBLite consensus disorder prediction 270 304 - -
Cla08g00710 466 PANTHER FACTOR, PUTATIVE-RELATED 1 426 - -
Cla08g00710 466 PANTHER F16F4.11 PROTEIN-RELATED 1 426 - -
Cla08g00710 466 MobiDBLite consensus disorder prediction 21 57 - -
Cla08g00710 466 MobiDBLite consensus disorder prediction 270 286 - -
Cla08g00710 466 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Cla08g00710 466 Gene3D - 121 193 - -
Cla08g00710 466 MobiDBLite consensus disorder prediction 85 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00710 - - - csv:105435760 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02259 Cla-Chr2:37696039 Cla08g00710 Cla-Chr8:19367246 2.65E-83 dispersed
Cla08g00710 Cla-Chr8:19367246 Cla10g01855 Cla-Chr10:34460786 1.45E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61539 PF13837 Myb_DNA-bind_4 4.90E-21 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00710 Cla_Chr08 FPKM 13.234841 14.583972 20.61614 20.142765 26.927923 25.382442 26.116568 29.294594 29.308626 28.362009