Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00712 ATGAAGAGGTTTGTTGGTTATGTAGAGGCCATGGAGGTCCACAAGCCCTACATTGCAATGTTGTTTGTTCAATGTGTTTATTCTGGAATGGCTTTGTTCTCTAAAGCAGCCATTTCTCAAGGCATGAACCCGCCCGTGTTCGTCTTTTATCGTCAAGCTTTCGCTACCGTTGCCATGGCTCCTCTCGCGATCTTACTCGAAAGAAAAAAGGCGGTGCCTTTATCTTTCAAGTTCCTTTCCAAGGTGTTCTTGGTTTCTCTAGTTGGGATCACTTTGAGTTTAAATCTTTATTACATAGCAATTAGCCACACATCAGCAACATTTGCAGCTGCCACTACCAACACCATTCCTGCCATTACCCTCCTTTTCGCTCTCCTTTTCGGATATGAAAGCATTTGCATAAGAAAGTTTGAAGGGATGGCCAAATTGATGGGGGCAGTGGTAGGTTTTTCAGGGGCTTTAGTATTTGCTTTTGTGAAGGGTCCACCAATGAAATTCATGAATTGGTATCCACAAACAAATAATAATAATAATTCAACTTCATTTCAAGCTTATTCCACCTTGGAATGGATCAAGGGTTCATTCACTATGCTTTCTGCCAACATTGCTTGGTCTTTATGGCTTGTTTTGCAGGGCTCCATTGTGAAGGAATATCCAGCAAAATTGAGAATTACAACTTTGCAGTGTTTCTTTAGTTTGATACAATCAGCTTTGTGGGCTTTGGTAATAGAGAGAAACCCACAAGCTTGGAAACTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGTGGTATAATTGTAACTGGAATGACGTATTGGCTACAAATATGGAGTGTAGAGAAGAAAGGGCCAGTTTTTACAGCTATGTTTACACCATTAGCTCTCATCATAACAGCAATCTTCTCAGCATTACTATGGAAGGAAACCCTTCATTGGGGAAGTCTTGGTGGGGGTATTTTGCTGGTGATGGGACTTTACTTTGTTCTATGGGGAAAGAAGAGAGAAGAAGAAGAACAACAACAACTAAGACATGACACCAAAGAGGAAACCATTTTGGAGTGCATTACAACAACACATCACTAA 1086 40.79 MKRFVGYVEAMEVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPVFVFYRQAFATVAMAPLAILLERKKAVPLSFKFLSKVFLVSLVGITLSLNLYYIAISHTSATFAAATTNTIPAITLLFALLFGYESICIRKFEGMAKLMGAVVGFSGALVFAFVKGPPMKFMNWYPQTNNNNNSTSFQAYSTLEWIKGSFTMLSANIAWSLWLVLQGSIVKEYPAKLRITTLQCFFSLIQSALWALVIERNPQAWKLGWNLQLFSVAYCGIIVTGMTYWLQIWSVEKKGPVFTAMFTPLALIITAIFSALLWKETLHWGSLGGGILLVMGLYFVLWGKKREEEEQQQLRHDTKEETILECITTTHH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19390302 19393281 + ClCG08G006990.1 Cla08g00712 278367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00712 361 PANTHER WAT1-RELATED PROTEIN 13 343 - -
Cla08g00712 361 Pfam EamA-like transporter family 15 148 IPR000620 GO:0016020|GO:0016021
Cla08g00712 361 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020|GO:0016021
Cla08g00712 361 PANTHER WAT1-RELATED PROTEIN 13 343 IPR030184 GO:0016021|GO:0022857
Cla08g00712 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 150 - -
Cla08g00712 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00712 - - - bhj:120075171 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01537 Cla-Chr1:29966743 Cla08g00712 Cla-Chr8:19390302 1.61E-15 dispersed
Cla02g00077 Cla-Chr2:769400 Cla08g00712 Cla-Chr8:19390302 1.35E-10 dispersed
Cla06g01276 Cla-Chr6:26041062 Cla08g00712 Cla-Chr8:19390302 1.11E-56 dispersed
Cla08g00712 Cla-Chr8:19390302 Cla04g00594 Cla-Chr4:19981693 4.53E-76 dispersed
Cla08g00712 Cla-Chr8:19390302 Cla11g01236 Cla-Chr11:25829143 5.46E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00712 Cla_Chr08 FPKM 0.1021 0.0 0.0 0.0 0.065143 0.0 0.1916 0.0 0.0 0.0