Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00713 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGACGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGGACAAGGAATTGTTTACAATGATTGTGATTTACTCTGTCTTGGTCATGTTTGGTCTATTCCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATATGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCATACCGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1359 46.5 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQDKELFTMIVIYSVLVMFGLFPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPIPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19403833 19408049 + ClCG08G007000.1 Cla08g00713 278368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00713 452 Pfam Tub family 137 447 IPR000007 -
Cla08g00713 452 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 452 - -
Cla08g00713 452 MobiDBLite consensus disorder prediction 389 408 - -
Cla08g00713 452 PRINTS Tubby superfamily signature 205 229 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 189 205 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 254 281 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 349 366 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 430 452 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 409 428 IPR000007 -
Cla08g00713 452 PRINTS Tubby superfamily signature 367 383 IPR000007 -
Cla08g00713 452 Gene3D Tubby Protein; Chain A 132 446 IPR025659 -
Cla08g00713 452 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cla08g00713 452 Gene3D - 48 103 - -
Cla08g00713 452 PANTHER TUBBY-RELATED 1 452 - -
Cla08g00713 452 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cla08g00713 452 ProSitePatterns Tub family signature 2. 437 452 IPR018066 -
Cla08g00713 452 ProSitePatterns Tub family signature 1. 367 380 IPR018066 -
Cla08g00713 452 SUPERFAMILY Tubby C-terminal domain-like 133 452 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00355 Cla-Chr8:8941658 Cla08g00713 Cla-Chr8:19403833 0 dispersed
Cla08g00713 Cla-Chr8:19403833 Cla09g00311 Cla-Chr9:3015017 6.14E-12 dispersed
Cla08g00713 Cla-Chr8:19403833 Cla06g00505 Cla-Chr6:6119251 1.78E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61540 PF01167 Tub 4.10E-115 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00713 K19600 - csv:101203074 839.336