Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00733 ATGGCGGCTACAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCGACAGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCCTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAAAGTGGTTATGGAAATGTTTTTATCAAAAATCTAGATACATCCATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAACTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGACACCAAGAAAGGATTCGAGCAAACGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGAGGATGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGCAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACCAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCGGTTGCCCAGCGCAAAGAAGAAAGAAAGGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCCGGAATGGCAGGATTTCATCCTGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTGCCGGATATGGCTTCCAACCTCAACTCATGAGCGGTATGCGACCTAGTATGGGCCCAAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGCTTCGTGGCTCCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGAATAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCATCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA 1965 46.11 MAATAPAPATAASVQTAAIPPSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFETEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDEDDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGMRRGGNSQSVQQQLLLRGSGQGFRYMNNARNGIEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19630576 19633971 + ClCG08G007210.1 Cla08g00733 278388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00733 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Cla08g00733 654 CDD RRM3_I_PABPs 212 295 - -
Cla08g00733 654 Gene3D - 33 123 IPR012677 -
Cla08g00733 654 SMART poly_2 574 637 IPR002004 GO:0003723
Cla08g00733 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723
Cla08g00733 654 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676
Cla08g00733 654 PANTHER RNA BINDING PROTEIN 35 642 - -
Cla08g00733 654 SUPERFAMILY PABC (PABP) domain 509 641 IPR036053 GO:0003723
Cla08g00733 654 SMART rrm1_1 36 109 IPR000504 GO:0003723
Cla08g00733 654 SMART rrm1_1 321 393 IPR000504 GO:0003723
Cla08g00733 654 SMART rrm1_1 214 290 IPR000504 GO:0003723
Cla08g00733 654 SMART rrm1_1 124 196 IPR000504 GO:0003723
Cla08g00733 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 635 IPR006515 GO:0003723
Cla08g00733 654 CDD RRM1_I_PABPs 36 115 - -
Cla08g00733 654 Coils Coil 289 309 - -
Cla08g00733 654 SMART rrm2_1 124 196 IPR003954 GO:0003676
Cla08g00733 654 SMART rrm2_1 214 281 IPR003954 GO:0003676
Cla08g00733 654 SMART rrm2_1 321 392 IPR003954 GO:0003676
Cla08g00733 654 SMART rrm2_1 36 109 IPR003954 GO:0003676
Cla08g00733 654 PANTHER POLYADENYLATE-BINDING PROTEIN 35 642 - -
Cla08g00733 654 Gene3D - 199 300 IPR012677 -
Cla08g00733 654 Coils Coil 395 415 - -
Cla08g00733 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 294 IPR000504 GO:0003723
Cla08g00733 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723
Cla08g00733 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Cla08g00733 654 CDD RRM2_I_PABPs 121 197 IPR045305 -
Cla08g00733 654 Pfam Poly-adenylate binding protein, unique domain 570 634 IPR002004 GO:0003723
Cla08g00733 654 Gene3D - 558 639 - -
Cla08g00733 654 Gene3D - 124 197 IPR012677 -
Cla08g00733 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Cla08g00733 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Cla08g00733 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 280 IPR000504 GO:0003723
Cla08g00733 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 390 IPR000504 GO:0003723
Cla08g00733 654 Gene3D - 301 406 IPR012677 -
Cla08g00733 654 CDD RRM4_I_PABPs 319 397 - -
Cla08g00733 654 SUPERFAMILY RNA-binding domain, RBD 212 400 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00320 Cla-Chr5:2920138 Cla08g00733 Cla-Chr8:19630576 2.72E-17 dispersed
Cla05g00772 Cla-Chr5:7394360 Cla08g00733 Cla-Chr8:19630576 6.71E-08 dispersed
Cla05g01087 Cla-Chr5:11241152 Cla08g00733 Cla-Chr8:19630576 4.43E-17 dispersed
Cla06g00417 Cla-Chr6:5071717 Cla08g00733 Cla-Chr8:19630576 1.26E-13 dispersed
Cla08g00733 Cla-Chr8:19630576 Cla10g01863 Cla-Chr10:34538337 1.66E-11 dispersed
Cla10g01104 Cla-Chr10:25313870 Cla08g00733 Cla-Chr8:19630576 1.16E-06 dispersed
Cla08g00733 Cla-Chr8:19630576 Cla02g00613 Cla-Chr2:6731074 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00733 K13126 - csv:101219081 1150.58