Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00735 ATGGCAGTTCACTCTCACATTGAGAGAGTGCTCTGGAACCAGGACCAAATTTCGGCTCGAGTCTCAGACCTCGCCTCCCAAATCTCCGCCGCCTTCGCCGGAACCTCTTCGCCGCCCGTCCTCGTTGGCGTTGCCACCGGAGCCTTCATCTTCCTGGCCGACTTGGTCCGTCGCATCAGTCTTCCAATCGCTGTTGACTTCGTTCGTGTCGAATCTTACGGTTTCGGTACTCAGTCTAATGGTGCTCCAAGAATCTCATCGGACTTGAAGGTCGATGTTAAGAACAATCATGTAATTCTGGTTGAGGATATTGTAGACACTGGAAATACTTTATCATGTCTCATTGCTCACATGGAGGCAAAAGGAGCATCATCTATATCAGTATGCACTTTTCTTGATAAACCAACAAGACGAAAGGTGAATTTTCAGCTAGTAGGCGAAGGAAAGTTCTACCGTGGGTTTGAATGTCCAGATTATTTTGTGGTGGGCTATGGAATGGACTTCGCAGAGCTGTACAGAAATTTACCATATGTTGGCGTTTTGAAGCCTGAATGTTACCAGTGA 564 47.34 MAVHSHIERVLWNQDQISARVSDLASQISAAFAGTSSPPVLVGVATGAFIFLADLVRRISLPIAVDFVRVESYGFGTQSNGAPRISSDLKVDVKNNHVILVEDIVDTGNTLSCLIAHMEAKGASSISVCTFLDKPTRRKVNFQLVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVGVLKPECYQ 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19638548 19641678 + ClCG08G007230.1 Cla08g00735 278390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00735 187 SUPERFAMILY PRTase-like 3 186 IPR029057 -
Cla08g00735 187 TIGRFAM HGPRTase: hypoxanthine phosphoribosyltransferase 10 182 IPR005904 GO:0004422|GO:0006166
Cla08g00735 187 CDD PRTases_typeI 24 147 IPR000836 -
Cla08g00735 187 PANTHER HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 3 187 - -
Cla08g00735 187 Gene3D - 1 187 IPR029057 -
Cla08g00735 187 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 3 187 - -
Cla08g00735 187 Pfam Phosphoribosyl transferase domain 15 168 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00735 K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] - csv:101219321 344.739
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla11g00360 . 73 557 PRT Gene Family AT2G16570 85.2 6.1e-243 837.0
Cla11g00360 . 73 557 PRT Gene Family AT4G34740 86.0 1.6e-243 839.0
Cla11g00360 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla01g00375 . 6 104 PRT Gene Family AT4G22570 82.8 5.4e-44 173.7
Cla10g00278 . 5 95 PRT Gene Family AT4G22570 85.7 1.5e-41 165.6
Cla08g01342 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Cla01g00375 . 1 96 PRT Gene Family AT4G12440 84.4 8.7e-41 162.9
Cla10g00278 . 1 95 PRT Gene Family AT4G12440 82.1 1.8e-38 155.2
Cla08g01342 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla08g00735 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cla09g02102 . 95 513 PRT Gene Family AT1G55810 88.8 3.1e-221 764.6
Cla05g01259 . 56 519 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cla09g02102 . 110 522 PRT Gene Family AT3G27440 76.1 1.6e-184 642.5
Cla05g01259 . 117 519 PRT Gene Family AT3G27440 75.4 9.2e-180 626.7
Cla05g01259 . 41 519 PRT Gene Family AT3G27190 86.0 9.4e-245 842.8
Cla09g02102 . 95 512 PRT Gene Family AT3G27190 81.1 3.6e-204 708.0
Cla04g00768 . 3 291 PRT Gene Family AT3G53900 65.4 2.4e-105 379.0
Cla09g02102 . 73 513 PRT Gene Family AT4G26510 84.0 4.9e-222 767.3
Cla05g01259 . 48 519 PRT Gene Family AT4G26510 75.8 7.3e-210 726.9
Cla05g01259 . 45 519 PRT Gene Family AT5G40870 87.0 9.5e-245 842.8
Cla09g02102 . 95 515 PRT Gene Family AT5G40870 79.6 1.2e-202 703.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00735 Cla_Chr08 FPKM 8.181793 6.860854 9.420993 9.147395 14.013858 14.628366 12.45205 15.225643 13.445754 12.731021