Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00746 ATGAAGTTTCTCTTATCGTTCTTACTTCTCTCTGTTACTTCTCCAGGTTTTTTTCACATTGCACTGGCTCGAGGTGACTCCAACCGCTTCATTTCGTCAGTGGATTTCGATTGTCGTGCATATGGCGGTTCTGCTAGAGTTTTACTCGAGGACGATAAATCTCAAGGAAGCATCATGCAAGGTTATATGACCAATAAAGAGCTTGAGGAGGCGATTAAAGCTTTCGGTAAAAAATGTAGTAAAATTTCTAGGATATACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGTGGGTAATGGAAATCTCTGACAAGCCAGGCCAGGAAGAAGCTGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTTTTGCAATTTGCTAACTGGATATGTGATAATTACCATAAGGATCCGTTGGCTACATTGATTGTGGAGAATGTTCATCTTCATATACTTCCATCCATGAATCCTGATGGGTTTTCTCTTAAGAGACGCAATAATGCGAACAATGTTGATCTAAACAGAGATTTCCCTGACCAGTTCTTTGTCATCAACGACGATGAATATGCGCGACAACCTGAAACAAAAGCAATAATGAAGTGGATGAGAGATGTACATTTCACTGCTTCTGCCAGTTTGCATGGGGGTGCACTTGTTGCAAATTACCCATGGGATGGCACAGCAGATAAAAGGAAAGATTATTATGCATGTCCAGATGATGAAACATTCCGATTCATGGCTAGTGTCTATAGTCGCTCACATCATAACATGTCTTTTAGCCAAGAATTTCAAGGAGGAATTACAAATGGAGCTCAATGGTACCCCATATATGGTGGCATGCAAGACTGGAACTACATACACGGTGGCTGTTTTGAGTTGACTTTAGAGATTACAGACAACAAATGGCCTCCTGCTAATGAGCTCGCCACCATTTTTGAGTATAACAAGTTGAGCATGCTAAAGCTTGTTGCAAGCCTTGTTCAGACAGGAATACATGGAAGAATTTTTTCATCAGATAGTGGAAGGCCGTTACCTGCAACCATTACACTCAATGGAATAGATTACTCGGTTAAAGCTAGTCAAAAGTTTGCCGACTACCACCGGTTAGCCGCCCCAAGACAAAAATGTCAGAATGATTATGCTTATTTTTGCTTTAACCTATGGAATGTCACTGCAGTAACCGCATCAATGCCCGGGTACAAGTCAAAGAATACAAGCATCTGGTTGGAAGAGGGAGCAATGTCTGTGGACTTTGTTCTTGATCCAGACACAACAACCAAAGGAAAACTAATACAAAACTGTGATTGCTACCGTGGCAATAGGCACGACTTTGTGGGCTATATTTGGGAACACTACTTTGAAGCCTATATTTTCTTGGCGGTTGTTTTAGTATTTTTTTGCTTTTTATTTCAGAGGAGGGTGAAATCTAGACTTTCCAAGCAAAGATTAGTTGCATTACCTAAGAGGATTGTGGTCTGA 1506 41.17 MKFLLSFLLLSVTSPGFFHIALARGDSNRFISSVDFDCRAYGGSARVLLEDDKSQGSIMQGYMTNKELEEAIKAFGKKCSKISRIYSIGDSVQGFPLWVMEISDKPGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYHKDPLATLIVENVHLHILPSMNPDGFSLKRRNNANNVDLNRDFPDQFFVINDDEYARQPETKAIMKWMRDVHFTASASLHGGALVANYPWDGTADKRKDYYACPDDETFRFMASVYSRSHHNMSFSQEFQGGITNGAQWYPIYGGMQDWNYIHGGCFELTLEITDNKWPPANELATIFEYNKLSMLKLVASLVQTGIHGRIFSSDSGRPLPATITLNGIDYSVKASQKFADYHRLAAPRQKCQNDYAYFCFNLWNVTAVTASMPGYKSKNTSIWLEEGAMSVDFVLDPDTTTKGKLIQNCDCYRGNRHDFVGYIWEHYFEAYIFLAVVLVFFCFLFQRRVKSRLSKQRLVALPKRIVV 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19746899 19755559 + ClCG08G007340.2 Cla08g00746 278401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00746 501 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 223 233 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 SUPERFAMILY Zn-dependent exopeptidases 58 333 - -
Cla08g00746 501 Pfam Zinc carboxypeptidase 69 323 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 Gene3D Zn peptidases 60 335 - -
Cla08g00746 501 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 88 100 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 220 233 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 179 187 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 113 127 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 61 383 - -
Cla08g00746 501 PANTHER CARBOXYPEPTIDASE D 61 383 IPR015567 GO:0004181|GO:0006518|GO:0008270
Cla08g00746 501 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 113 135 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 SMART zn_carb 62 322 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cla08g00746 501 Gene3D - 338 432 - -
Cla08g00746 501 CDD M14_CP_plant 62 334 - -
Cla08g00746 501 SUPERFAMILY Carboxypeptidase regulatory domain-like 339 440 IPR008969 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00746 - - K07752 csv:101220508 880.552
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00746 Cla_Chr08 FPKM 5.593254 6.240454 0.636706 0.572994 1.605829 1.683557 2.157288 0.687415 0.575332 0.730161