Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00747 ATTATTTTCACTCAAATTCTTCGTACATCCGGTTCCGTTCGTAATGAACAATTGATTTATCATACAGATGTTTTGGTGCCCGAGGTGAGAGACGCTAAAAATAATGCCATCAAGTTTTCTGCAGCACCTAAAGTTGGAGAACATGAGGATTTTGATTTTGTGCGTACCTTATATGAAGGTGCTATAGCTGGAGGTGCTGCTAGCCTCGTTGTAGAAGCTGCTCTATATCCAATTGATACAATAAAAACTCGTCTACAGGCTGTTCACGGAGGAGGAAAAGTTGTACTGAAGGGTCTTTATTCTGGATTGGCTGGAAATCTTGTTGGGATGTTTCCTGCCACTGCCGTTTTCGTTGGTGTGTATGAGCCTACCAAGCAGAAATTGCTCAAGTCTCTCCCTGAAAACGTCAATGCTTTAGCTCATCTGGCTGCAGGTGTCGCAGGAGGAGTGGCTTCATCAATCATCCGTGTACCAACAGAGGTAGTTAAGCAAAGGATGCAGACTAGCCACTTTGCGTCTGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGCTTTAAAGGCCTTTATGCGGGTTATGGATCTTTCTTATTACGAGATTTGCCATTTGATGCCATTCAGTTCTGCATTTACGAACAACTTAGGATAGGGTACAAGCTAGCGGCACAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCGGTTACTGGGGCTATAACCACTCCTTTTGATGTGATCAAAACTCGATTAATGGTCCAGGGATCAAATAGCCAATATCAAGGTATTCGTGATTGTTGTAGGACTATAATGAAGGAAGAAGGAGCACGTGCCTTCTTAAAGGGCATAGGGCCAAGGGTATTATGGATAGGGTTAGGAGGCGCCATATTCTTTGGCGTTCTTGAAAAAACAAAGCAGATGCTTGCTAATAAGGGGCGTCCAGTGCCTGAGAAACCCGTCGAATCGCGATGA 990 44.04 IIFTQILRTSGSVRNEQLIYHTDVLVPEVRDAKNNAIKFSAAPKVGEHEDFDFVRTLYEGAIAGGAASLVVEAALYPIDTIKTRLQAVHGGGKVVLKGLYSGLAGNLVGMFPATAVFVGVYEPTKQKLLKSLPENVNALAHLAAGVAGGVASSIIRVPTEVVKQRMQTSHFASASNAVHVIVSREGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAVTGAITTPFDVIKTRLMVQGSNSQYQGIRDCCRTIMKEEGARAFLKGIGPRVLWIGLGGAIFFGVLEKTKQMLANKGRPVPEKPVESR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19756856 19763726 - ClCG08G007350.1 Cla08g00747 278402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00747 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 218 IPR018108 -
Cla08g00747 329 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 19 319 - -
Cla08g00747 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 313 IPR018108 -
Cla08g00747 329 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Cla08g00747 329 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Cla08g00747 329 PRINTS Mitochondrial carrier protein signature 73 87 IPR002067 GO:0055085
Cla08g00747 329 PRINTS Mitochondrial carrier protein signature 60 73 IPR002067 GO:0055085
Cla08g00747 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 55 127 IPR018108 -
Cla08g00747 329 SUPERFAMILY Mitochondrial carrier 58 308 IPR023395 -
Cla08g00747 329 Pfam Mitochondrial carrier protein 136 216 IPR018108 -
Cla08g00747 329 Pfam Mitochondrial carrier protein 231 317 IPR018108 -
Cla08g00747 329 Gene3D Mitochondrial carrier domain 59 320 IPR023395 -
Cla08g00747 329 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 19 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00747 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:101220750 530.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g02127 Cla08g00747 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00747 Cla-Chr8:19756856 Cla01g01945 Cla-Chr1:34117062 1.00E-16 dispersed
Cla01g00261 Cla-Chr1:2662225 Cla08g00747 Cla-Chr8:19756856 1.59E-40 transposed
Cla02g00100 Cla-Chr2:1131098 Cla08g00747 Cla-Chr8:19756856 2.25E-65 transposed
Cla02g01559 Cla-Chr2:30270794 Cla08g00747 Cla-Chr8:19756856 1.63E-11 transposed
Cla02g01883 Cla-Chr2:34027113 Cla08g00747 Cla-Chr8:19756856 2.73E-06 transposed
Cla04g00684 Cla-Chr4:21617124 Cla08g00747 Cla-Chr8:19756856 1.38E-39 transposed
Cla06g00557 Cla-Chr6:6761749 Cla08g00747 Cla-Chr8:19756856 1.80E-12 transposed
Cla08g00676 Cla-Chr8:19028997 Cla08g00747 Cla-Chr8:19756856 8.40E-07 transposed
Cla05g02127 Cla-Chr5:32860705 Cla08g00747 Cla-Chr8:19756856 3.24E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g472 . Blo13g00914 . Bda15g00180 Bpe04g01680 Bpe15g01071 Bma03g00328 . . Cmo04g01428 Cma04g01354 Cma18g00881 Car04g01431 Car18g00807 . . Cpe09g00429 . . . . . . . Cla05g02127 Cam05g2281 Cec05g2304 Cco05g2345 Clacu05g2278 Cmu05g2141 Cre05g2263 . Cone5ag0327 Cone11ag1076 Cone18ag0500 . . Chy10g01341 Cme10g00055 Blo13g00731 Blo04g00309 Bda14g00339 Bda15g00379 Bpe04g01680 . . . . . . . . . . Cpe01g01223 . . . . . . . . Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 Lsi04g00053 Csa05g02827 . .
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00747 Cla_Chr08 FPKM 2.745275 2.517789 28.925383 31.742897 16.061184 16.473047 16.950916 2.007436 1.739248 1.869807