Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00761 ATGGCGAAGAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTTGCTTTTTCTGTATGTAACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGTTAAACAGTAGAGAATGTGTAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCCAATGGGCTTGCCGATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 888 51.01 MAKNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGLNSRECVGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19975775 19979135 - ClCG08G007490.2 Cla08g00761 278416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00761 295 PANTHER AQUAPORIN PIP2-4-RELATED 6 292 - -
Cla08g00761 295 Gene3D Glycerol uptake facilitator protein. 22 295 IPR023271 -
Cla08g00761 295 TIGRFAM MIP: MIP family channel proteins 41 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 292 IPR034294 -
Cla08g00761 295 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 Pfam Major intrinsic protein 29 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g00761 295 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Cla08g00761 295 SUPERFAMILY Aquaporin-like 29 279 IPR023271 -
Cla08g00761 295 CDD MIP 37 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02143 Cla08g00761 CCT
Cla05g02143 Cla08g00761 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00512 Cla-Chr6:6189219 Cla08g00761 Cla-Chr8:19975775 7.98E-17 dispersed
Cla07g00380 Cla-Chr7:4586834 Cla08g00761 Cla-Chr8:19975775 4.10E-131 dispersed
Cla10g01933 Cla-Chr10:35173230 Cla08g00761 Cla-Chr8:19975775 5.50E-125 wgd
Cla04g00881 Cla-Chr4:23808256 Cla08g00761 Cla-Chr8:19975775 2.99E-142 wgd
Cla05g02143 Cla-Chr5:33021643 Cla08g00761 Cla-Chr8:19975775 1.12E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00761 K09872 - csv:101205700 508.834