Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00767 | ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAAAGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAGTGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGAGGGTGATTGATTACTGTTCATCTGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAAAGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAGTGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTGGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCTTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAAACTCCAAATCAGCAAACCGCTTCCGGGACAATTTCCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCAGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAAGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAG | 3171 | 44.91 | MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTKEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQRVIDYCSSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTKEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPKLQISKPLPGQFPPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH | 1056 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20014235 | 20018389 | - | ClCG08G007550.1 | Cla08g00767 | 278422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00767 | 1056 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 378 | 1045 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla08g00767 | 1056 | CDD | B3_DNA | 121 | 222 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | CDD | B3_DNA | 486 | 587 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | MobiDBLite | consensus disorder prediction | 909 | 961 | - | - | |
Cla08g00767 | 1056 | Pfam | B3 DNA binding domain | 487 | 588 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | Pfam | B3 DNA binding domain | 122 | 223 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | Gene3D | - | 967 | 1051 | - | - | |
Cla08g00767 | 1056 | PANTHER | AUXIN RESPONSE FACTOR 16 | 378 | 1045 | - | - | |
Cla08g00767 | 1056 | ProSiteProfiles | B3 DNA-binding domain profile. | 122 | 224 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | SUPERFAMILY | DNA-binding pseudobarrel domain | 475 | 589 | IPR015300 | - | |
Cla08g00767 | 1056 | Gene3D | - | 320 | 376 | - | - | |
Cla08g00767 | 1056 | Gene3D | - | 685 | 756 | - | - | |
Cla08g00767 | 1056 | ProSiteProfiles | B3 DNA-binding domain profile. | 487 | 589 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | SUPERFAMILY | DNA-binding pseudobarrel domain | 110 | 224 | IPR015300 | - | |
Cla08g00767 | 1056 | Gene3D | - | 485 | 589 | IPR015300 | - | |
Cla08g00767 | 1056 | Gene3D | - | 120 | 224 | IPR015300 | - | |
Cla08g00767 | 1056 | ProSiteProfiles | PB1 domain profile. | 968 | 1048 | IPR000270 | GO:0005515 | |
Cla08g00767 | 1056 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 13 | 368 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla08g00767 | 1056 | Pfam | Auxin response factor | 281 | 364 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla08g00767 | 1056 | Pfam | Auxin response factor | 646 | 729 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla08g00767 | 1056 | PANTHER | AUXIN RESPONSE FACTOR 16 | 13 | 368 | - | - | |
Cla08g00767 | 1056 | SMART | B3_2 | 487 | 589 | IPR003340 | GO:0003677 | |
Cla08g00767 | 1056 | SMART | B3_2 | 122 | 224 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02068 | Cla-Chr2:35722164 | Cla08g00767 | Cla-Chr8:20014235 | 2.71E-65 | dispersed | |
Cla08g00767 | Cla-Chr8:20014235 | Cla06g01783 | Cla-Chr6:31246818 | 2.88E-62 | dispersed | |
Cla08g01088 | Cla-Chr8:23631944 | Cla08g00767 | Cla-Chr8:20014235 | 8.69E-86 | transposed | |
Cla04g00891 | Cla-Chr4:23915331 | Cla08g00767 | Cla-Chr8:20014235 | 1.68E-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61544 | PF02362 | B3 | 7.30E-20 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00767 | - | - | cmo:103496426 | 1202.58 |