Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00767 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAAAGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAGTGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGAGGGTGATTGATTACTGTTCATCTGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAAAGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAGTGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTGGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCTTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAAACTCCAAATCAGCAAACCGCTTCCGGGACAATTTCCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCAGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAAGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAG 3171 44.91 MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTKEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQRVIDYCSSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTKEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPKLQISKPLPGQFPPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20014235 20018389 - ClCG08G007550.1 Cla08g00767 278422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00767 1056 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 378 1045 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla08g00767 1056 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cla08g00767 1056 CDD B3_DNA 486 587 IPR003340 GO:0003677
Cla08g00767 1056 MobiDBLite consensus disorder prediction 909 961 - -
Cla08g00767 1056 Pfam B3 DNA binding domain 487 588 IPR003340 GO:0003677
Cla08g00767 1056 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cla08g00767 1056 Gene3D - 967 1051 - -
Cla08g00767 1056 PANTHER AUXIN RESPONSE FACTOR 16 378 1045 - -
Cla08g00767 1056 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cla08g00767 1056 SUPERFAMILY DNA-binding pseudobarrel domain 475 589 IPR015300 -
Cla08g00767 1056 Gene3D - 320 376 - -
Cla08g00767 1056 Gene3D - 685 756 - -
Cla08g00767 1056 ProSiteProfiles B3 DNA-binding domain profile. 487 589 IPR003340 GO:0003677
Cla08g00767 1056 SUPERFAMILY DNA-binding pseudobarrel domain 110 224 IPR015300 -
Cla08g00767 1056 Gene3D - 485 589 IPR015300 -
Cla08g00767 1056 Gene3D - 120 224 IPR015300 -
Cla08g00767 1056 ProSiteProfiles PB1 domain profile. 968 1048 IPR000270 GO:0005515
Cla08g00767 1056 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 368 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla08g00767 1056 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla08g00767 1056 Pfam Auxin response factor 646 729 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla08g00767 1056 PANTHER AUXIN RESPONSE FACTOR 16 13 368 - -
Cla08g00767 1056 SMART B3_2 487 589 IPR003340 GO:0003677
Cla08g00767 1056 SMART B3_2 122 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02068 Cla-Chr2:35722164 Cla08g00767 Cla-Chr8:20014235 2.71E-65 dispersed
Cla08g00767 Cla-Chr8:20014235 Cla06g01783 Cla-Chr6:31246818 2.88E-62 dispersed
Cla08g01088 Cla-Chr8:23631944 Cla08g00767 Cla-Chr8:20014235 8.69E-86 transposed
Cla04g00891 Cla-Chr4:23915331 Cla08g00767 Cla-Chr8:20014235 1.68E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61544 PF02362 B3 7.30E-20 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00767 - - cmo:103496426 1202.58