Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00772 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCCGTGAAGGAGACCTCTTTGTGTGGCGACGTGGCGGTGTATTGGAGCAGTGCAGCGAAGGGGCTCGAGCAGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCTATTGCTACCCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGCCCTGCCGTGGAGGCAAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGAAACCGATAGTTATGGTGTTACAACTGGTTTTGGTTCTACGTCGCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAATGCTGGAATTTTTGGAAACGATCCGAATTCTTGCCATACATTGCCACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATTACAGCTTCTGGTGACCTAGTTCCTCTCTCATATATTGCTGGGCTTTTGACTGGTCGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAACCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAACCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGCGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCACTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGTGTGTCCATGGATAATACTCGTTTAGCCATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGTTTGGATTACGGGTTTAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGCGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCAAGAAAGACAGCGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTGGTCGCATTATGCCAAGCTATTGATTTAAGACACATAGAGGAGATTTTGAAGAAAACAGTAAAGAATACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACGTTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAGGCTAAGACACGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCTAAAGATCACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTCATTAGAGAAACGTTGGGAACTCAATTGTTGACTGGCGAGAAAGATGTTTCGCCAGGAGAAGAATTCGATAAGGTTTTTTCAGCTATTTCTGATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGTTCCGCTTCCTCTTAGTTAG 2142 42.16 MEFHPENGNHGSVKETSLCGDVAVYWSSAAKGLEQSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPAVEASSRWVVKSMTNETDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLPQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSAILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHIEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHVFAYIDDPCSASYPLMQRLRHVLVDHALKNGEKENNPSASIFLKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKECRSYPLYKFIRETLGTQLLTGEKDVSPGEEFDKVFSAISDGKLIDPMLECLKDWNGVPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20117545 20121796 + ClCG08G007595.1 Cla08g00772 278427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00772 713 Gene3D - 15 259 IPR024083 -
Cla08g00772 713 CDD PAL-HAL 58 523 IPR001106 -
Cla08g00772 713 SUPERFAMILY L-aspartase-like 24 712 IPR008948 GO:0003824
Cla08g00772 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 712 - -
Cla08g00772 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla08g00772 713 Gene3D - 526 647 IPR023144 -
Cla08g00772 713 Pfam Aromatic amino acid lyase 60 533 IPR001106 -
Cla08g00772 713 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Cla08g00772 713 PANTHER HISTIDINE AMMONIA-LYASE 21 712 IPR001106 -
Cla08g00772 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01126 Cla-Chr7:28135308 Cla08g00772 Cla-Chr8:20117545 0 dispersed
Cla07g01127 Cla-Chr7:28138988 Cla08g00772 Cla-Chr8:20117545 0 dispersed
Cla04g00895 Cla-Chr4:23967227 Cla08g00772 Cla-Chr8:20117545 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00772 K10775 - csv:101206890 1273.46