Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g00798 | ATGTCTGCTACTACTGGCATTCTCTTCTTCATCTGGTTGTTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCCGATCCTGAGACTGTTGCTTATCAAGTTCAGAGAACATGCCCCAAATGGTCTGCTCTTGAACTCTTTTTGGCATTTTATCAAACAATTGGTGTGCCATTACTGCATTTGCTCAAGCTGCAGTCCCCTGTTTCCATGGCTTACCACATTAATCCTATCAATCTTTCTTGCAGGAGTGTGAACGATTCCATTTCCAGAAGACAAATGCTGTCCTTTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACCAAAGCTCCTCCAGCTCGGGATCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCGCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACGATGCTTTATTATCATCAACATTGTCATTGTAG | 1635 | 50.64 | MSATTGILFFIWLLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRTCPKWSALELFLAFYQTIGVPLLHLLKLQSPVSMAYHINPINLSCRSVNDSISRRQMLSFHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDQSSSSSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYDALLSSTLSL | 544 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 20385193 | 20391077 | - | ClCG08G007850.1 | Cla08g00798 | 278453 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g00798 | 544 | MobiDBLite | consensus disorder prediction | 462 | 489 | - | - | |
| Cla08g00798 | 544 | Pfam | Pectate lyase | 203 | 384 | IPR002022 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 347 | 366 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 369 | 388 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 440 | 463 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 167 | 192 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 267 | 288 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 143 | 160 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 203 | 219 | IPR018082 | - | |
| Cla08g00798 | 544 | PRINTS | Pollen allergen Amb family signature | 411 | 435 | IPR018082 | - | |
| Cla08g00798 | 544 | SUPERFAMILY | Pectin lyase-like | 121 | 460 | IPR011050 | - | |
| Cla08g00798 | 544 | Gene3D | - | 120 | 462 | IPR012334 | - | |
| Cla08g00798 | 544 | SMART | amb_all | 195 | 392 | IPR002022 | - | |
| Cla08g00798 | 544 | PANTHER | PECTATE LYASE | 5 | 52 | - | - | |
| Cla08g00798 | 544 | PANTHER | PECTATE LYASE | 96 | 480 | - | - | |
| Cla08g00798 | 544 | PANTHER | PECTATE LYASE 18-RELATED | 96 | 480 | IPR045032 | GO:0030570 | |
| Cla08g00798 | 544 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 52 | IPR045032 | GO:0030570 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla08g00798 | Cla-Chr8:20385193 | Cla09g01903 | Cla-Chr9:36705078 | 5.18E-166 | dispersed | |
| Cla04g00927 | Cla-Chr4:24255701 | Cla08g00798 | Cla-Chr8:20385193 | 0 | wgd | |
| Cla05g02174 | Cla-Chr5:33325321 | Cla08g00798 | Cla-Chr8:20385193 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g00798 | K01728 | - | csv:101207535 | 893.649 |