Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00816 ATGGTTTCAGAATCTTGGTTTCGTAGTCTGTGGAAGCCTCCAAGGAAGCGCGATTCCACACAGAAGGTTGTAATCGGAGTATTAGCTTTTGAAATTGCTAGCTTGATGTCCAAGTTGGTTCATCTATGGCAGTCTTTGAGTGATAAGCAAGTCGGGAGGTTGAGAGAAGAGATAAACAATTCGTTGGGCATTAAGAAGCTTGTGTCAGATGACGATGAATATATTGTACGTTTGATATGTGCAGAGATGACAGAAAGTTTAGCTCATGTGGCTAAATCTGTTGCCAGGCTTGGAAAGAAATGCAGTGATCCTAGTTTAAAAAATTTCGAGCATGTTTTTGATGCTTTGATTCAAATTGGTGCTGATCCCTATGGTTGGATATACTCATGGAAGAAGATGGAAAAGAAAGTGAAGAAGATGGAGACCTTTATTTCAGTCAATGCAAATTTGTATCAGGAAATGGAGATGCTTGCAGATCTTGAGCAAACTTTAAGGAGGATGAAGGTTAATGACGACTCGGATGTTATAACCCTAGTCGAGTTTCAAAAGAAGGTTGCATGGAAGCAGCAGGAGGTGAAAAATTTGCGAGAGATGTCACTTTGGAAAAGGACCTATGATTACACAATTCTTCTTCTAGCTAGATCGCTATTCACCATATTCAGTAGGATCAAACATGTATTTGAAATTGAGCAGAGCATGGATGACGGATCAAATGATTCACGAGATATGAGTTCTGACTATATTGCACGTAGTCAATCAGTGTCTTCATTAATGCAATCCATGGTCCATCCCTCTGAGAATGGTCTTACTAAATTTGCTTCGGGTCCCCTTAAGAGGTTTACAACTAAATCAGGGCCAATTTCAAAAACAGCTAAACCCAATAGTTTTTATTCAGGTCCTCTTGGTGGCTCTATTACGAAGTCAGGTCCTATTTCAGGCCCTGTTTCCGGAACCAATAGAAACTTCAACTCTTATTCAGGTCCTCTCACAAGTTCAACAATAAGATCAGGTCCAATTTCTGGAATAGACAATAAAACCAATCAGAAGAATTGGCTTGTCGGTGGCTACTCTTCACTATTTAATGGGAAGAAATCTCATCAGAAGCCAAACAGACTGACTCAAGTTGGACCTTTTAAAGGATGCATGATATCTGGCCCTAGTTCTATGGTTGTCAATTGCCACATTAGTTCAAATGGGTATCATTCTGAGATTGTTGATCCTTGCAACAGAGCCAATCCTTACAAACAATTGCTTAGCGCTAAGTGTCGATTGTTGGATGCCCCACCTGAGACTCTTGGTGGTGCTGCTTTGGCACTGCACTATGCAAATGTCATTATTGTAATTGAGAAGCTTGCTGCATCTCCTCATTTGATTGGCCTGGATGCTAGAGATGATCTATACAATATGCTTCCAGCTAAAGTTCGAGCTAGCCTTAGGGCGGCCCTAAAGCCATATGCCAAAAGCTTGGCTTCATCTGCGTATGACACAGGTCTTGCAGGAGAGTGGAATGAGGCAATAGCTGGGATATTAGAATGGCTTGCTCCACTGGCTCATAACATGGTTAGATGGCAATCTGAACGTAGTTTTGAACAACAGAATTTTGTTTCCAGGACCAATATGCTTCTTGTACAAACTCTTTTCTTTGCAAATCAAGAAAAGACCGAAGCAATCATTACCGAACTTCTTGTTGGTCTGAATTACCTATGGAGGTTTGCACAGTCCTCCAACGACAGGAGGCCTCCTCAGCTCTACAAGACCGATATCGACCAATTTGAAGCGGCACGATGGAGAGAGAGAGAGAGAGAGCTGTCGCTACTCAGTTGCATTATCGATACTCAAATACCAGAAGTCACTATTGACGAGTTAGTCGGTTCGCCGCAAATGGCAACGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATATTCCGGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAGATTGAGCCTGTTCCGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTTGAAGCGGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGACGTTATTGCCCTTGGGACTATACCACTGGCTACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCCGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATCGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGCAAAGTATATGATGCATTATTGAGGTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCCAATCCGGGCCATCCAATGATGAAGAGATGTTGCAGGCTTCTACCTTTCGTGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGCACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCCCTTTGCTCGAATCTTGCTGGTGGTCAAGGGTTATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTGACTCGGCTGAGAGAGTACTTGGATACTCATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAATGCAACGGTGCTAGTTCATTGCAGTGACGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACGTTTGCTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCATGCCGACCATATCAGGAAGTGGTAACATGCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTTTTTCTTCTTCACCTTTGCGTCAGCCATCAGGTGCATTCATATCTCAAGCTTCCAGTCCTCCTCATGCTCAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCGTTTGAGTTCTCTTCAGCATTCCTTGTGGATTTGTTGGATTGTATGCTTTCCTGTCGCTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGGCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTCTATGGGCGTATTTAGCTGATTTACGAGCCTCAGAAGGAAGTACGCATGTGCATCATAACCTCTTTTATGATCCTACCAAACATGAAGGTCCTCTCTTACCTCCTGCAGCATCTCTAGCTCCAACTCTCTGGCCACAATTCCATCTTCGTTGGGCTTGTCCAAAAGAATCCCAAGCTGGGGAACTTGAAGTCAAATGCAGGAAAATGGCTATAAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCTGAGAGAAAAGCCCAGGAGATGACGGCTGCCATGGAATCATTAAAATCCGAGTTGCAAAGCGAGAAACAGTTAAGTATATCTGCTAGGAATGCTGCAAAAAGTGCAAGCAAAGAATGCGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGTTATTGTACTGTTGATATTGAGGGCGACCTGATGAAAAAATCCAACCAGAAAAGTCATCCTGCTTCAAGAAGGACTTCACATCGTTCGCTGCCACGCCCTAGTGAAGAGAATGACCTCTCGCTTTCTATCACAGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGGTGCCGATGGCCTGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGACTGAAGGCAAATTTCGACGCATTCGATCAACTATCCATATATGATGGTTATTTCAAGCCAGAGTGA 4251 43.43 MVSESWFRSLWKPPRKRDSTQKVVIGVLAFEIASLMSKLVHLWQSLSDKQVGRLREEINNSLGIKKLVSDDDEYIVRLICAEMTESLAHVAKSVARLGKKCSDPSLKNFEHVFDALIQIGADPYGWIYSWKKMEKKVKKMETFISVNANLYQEMEMLADLEQTLRRMKVNDDSDVITLVEFQKKVAWKQQEVKNLREMSLWKRTYDYTILLLARSLFTIFSRIKHVFEIEQSMDDGSNDSRDMSSDYIARSQSVSSLMQSMVHPSENGLTKFASGPLKRFTTKSGPISKTAKPNSFYSGPLGGSITKSGPISGPVSGTNRNFNSYSGPLTSSTIRSGPISGIDNKTNQKNWLVGGYSSLFNGKKSHQKPNRLTQVGPFKGCMISGPSSMVVNCHISSNGYHSEIVDPCNRANPYKQLLSAKCRLLDAPPETLGGAALALHYANVIIVIEKLAASPHLIGLDARDDLYNMLPAKVRASLRAALKPYAKSLASSAYDTGLAGEWNEAIAGILEWLAPLAHNMVRWQSERSFEQQNFVSRTNMLLVQTLFFANQEKTEAIITELLVGLNYLWRFAQSSNDRRPPQLYKTDIDQFEAARWRERERELSLLSCIIDTQIPEVTIDELVGSPQMATPKPRTTRSRSHRDIPDLEKMDAAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKIVVKTNSVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQSGPSNDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGGQGLSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALENATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTISGSGNMPYELSRQSSTGSFSSSPLRQPSGAFISQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSTHVHHNLFYDPTKHEGPLLPPAASLAPTLWPQFHLRWACPKESQAGELEVKCRKMAIKFSEMQKDKEIAERKAQEMTAAMESLKSELQSEKQLSISARNAAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIEGDLMKKSNQKSHPASRRTSHRSLPRPSEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANFDAFDQLSIYDGYFKPE 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20549716 20569578 - ClCG08G008030.2 Cla08g00816 278471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00816 1416 Coils Coil 1238 1272 - -
Cla08g00816 1416 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 646 803 - -
Cla08g00816 1416 Gene3D - 690 790 IPR011993 -
Cla08g00816 1416 PANTHER MYOTUBULARIN-RELATED 646 803 IPR030564 -
Cla08g00816 1416 PANTHER MYOTUBULARIN-RELATED 807 1415 IPR030564 -
Cla08g00816 1416 Coils Coil 178 198 - -
Cla08g00816 1416 Pfam Domain of unknown function (DUF3475) 27 83 IPR021864 GO:0045927
Cla08g00816 1416 Pfam Myotubularin-like phosphatase domain 807 1155 IPR010569 -
Cla08g00816 1416 Pfam Protein of unknown function (DUF668) 431 522 IPR007700 GO:0045927
Cla08g00816 1416 ProSiteProfiles Myotubularin phosphatase domain. 808 1213 IPR010569 -
Cla08g00816 1416 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 807 1415 - -
Cla08g00816 1416 SUPERFAMILY PH domain-like 678 802 - -
Cla08g00816 1416 CDD PTP-MTM-like 821 1115 - -
Cla08g00816 1416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 806 1217 IPR029021 -
Cla08g00816 1416 MobiDBLite consensus disorder prediction 1320 1345 - -
Cla08g00816 1416 ProSitePatterns Tyrosine specific protein phosphatases active site. 1001 1011 IPR016130 GO:0016311|GO:0016791
Cla08g00816 1416 SMART gram2001c 670 738 IPR004182 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00816 Cla-Chr8:20549716 Cla09g00971 Cla-Chr9:10206646 5.23E-13 dispersed
Cla05g00812 Cla-Chr5:7944866 Cla08g00816 Cla-Chr8:20549716 6.45E-43 transposed
Cla10g01850 Cla-Chr10:34422637 Cla08g00816 Cla-Chr8:20549716 4.50E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00816 K18081 - csv:101204839 1175.61