Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00816 ATGGTTTCAGAATCTTGGTTTCGTAGTCTGTGGAAGCCTCCAAGGAAGCGCGATTCCACACAGAAGGTTGTAATCGGAGTATTAGCTTTTGAAATTGCTAGCTTGATGTCCAAGTTGGTTCATCTATGGCAGTCTTTGAGTGATAAGCAAGTCGGGAGGTTGAGAGAAGAGATAAACAATTCGTTGGGCATTAAGAAGCTTGTGTCAGATGACGATGAATATATTGTACGTTTGATATGTGCAGAGATGACAGAAAGTTTAGCTCATGTGGCTAAATCTGTTGCCAGGCTTGGAAAGAAATGCAGTGATCCTAGTTTAAAAAATTTCGAGCATGTTTTTGATGCTTTGATTCAAATTGGTGCTGATCCCTATGGTTGGATATACTCATGGAAGAAGATGGAAAAGAAAGTGAAGAAGATGGAGACCTTTATTTCAGTCAATGCAAATTTGTATCAGGAAATGGAGATGCTTGCAGATCTTGAGCAAACTTTAAGGAGGATGAAGGTTAATGACGACTCGGATGTTATAACCCTAGTCGAGTTTCAAAAGAAGGTTGCATGGAAGCAGCAGGAGGTGAAAAATTTGCGAGAGATGTCACTTTGGAAAAGGACCTATGATTACACAATTCTTCTTCTAGCTAGATCGCTATTCACCATATTCAGTAGGATCAAACATGTATTTGAAATTGAGCAGAGCATGGATGACGGATCAAATGATTCACGAGATATGAGTTCTGACTATATTGCACGTAGTCAATCAGTGTCTTCATTAATGCAATCCATGGTCCATCCCTCTGAGAATGGTCTTACTAAATTTGCTTCGGGTCCCCTTAAGAGGTTTACAACTAAATCAGGGCCAATTTCAAAAACAGCTAAACCCAATAGTTTTTATTCAGGTCCTCTTGGTGGCTCTATTACGAAGTCAGGTCCTATTTCAGGCCCTGTTTCCGGAACCAATAGAAACTTCAACTCTTATTCAGGTCCTCTCACAAGTTCAACAATAAGATCAGGTCCAATTTCTGGAATAGACAATAAAACCAATCAGAAGAATTGGCTTGTCGGTGGCTACTCTTCACTATTTAATGGGAAGAAATCTCATCAGAAGCCAAACAGACTGACTCAAGTTGGACCTTTTAAAGGATGCATGATATCTGGCCCTAGTTCTATGGTTGTCAATTGCCACATTAGTTCAAATGGGTATCATTCTGAGATTGTTGATCCTTGCAACAGAGCCAATCCTTACAAACAATTGCTTAGCGCTAAGTGTCGATTGTTGGATGCCCCACCTGAGACTCTTGGTGGTGCTGCTTTGGCACTGCACTATGCAAATGTCATTATTGTAATTGAGAAGCTTGCTGCATCTCCTCATTTGATTGGCCTGGATGCTAGAGATGATCTATACAATATGCTTCCAGCTAAAGTTCGAGCTAGCCTTAGGGCGGCCCTAAAGCCATATGCCAAAAGCTTGGCTTCATCTGCGTATGACACAGGTCTTGCAGGAGAGTGGAATGAGGCAATAGCTGGGATATTAGAATGGCTTGCTCCACTGGCTCATAACATGGTTAGATGGCAATCTGAACGTAGTTTTGAACAACAGAATTTTGTTTCCAGGACCAATATGCTTCTTGTACAAACTCTTTTCTTTGCAAATCAAGAAAAGACCGAAGCAATCATTACCGAACTTCTTGTTGGTCTGAATTACCTATGGAGGTTTGCACAGTCCTCCAACGACAGGAGGCCTCCTCAGCTCTACAAGACCGATATCGACCAATTTGAAGCGGCACGATGGAGAGAGAGAGAGAGAGAGCTGTCGCTACTCAGTTGCATTATCGATACTCAAATACCAGAAGTCACTATTGACGAGTTAGTCGGTTCGCCGCAAATGGCAACGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATATTCCGGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAGATTGAGCCTGTTCCGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTTGAAGCGGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGACGTTATTGCCCTTGGGACTATACCACTGGCTACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCCGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATCGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGCAAAGTATATGATGCATTATTGAGGTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCCAATCCGGGCCATCCAATGATGAAGAGATGTTGCAGGCTTCTACCTTTCGTGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGCACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCCCTTTGCTCGAATCTTGCTGGTGGTCAAGGGTTATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTGACTCGGCTGAGAGAGTACTTGGATACTCATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAATGCAACGGTGCTAGTTCATTGCAGTGACGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACGTTTGCTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCATGCCGACCATATCAGGAAGTGGTAACATGCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTTTTTCTTCTTCACCTTTGCGTCAGCCATCAGGTGCATTCATATCTCAAGCTTCCAGTCCTCCTCATGCTCAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCGTTTGAGTTCTCTTCAGCATTCCTTGTGGATTTGTTGGATTGTATGCTTTCCTGTCGCTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGGCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTCTATGGGCGTATTTAGCTGATTTACGAGCCTCAGAAGGAAGTACGCATGTGCATCATAACCTCTTTTATGATCCTACCAAACATGAAGGTCCTCTCTTACCTCCTGCAGCATCTCTAGCTCCAACTCTCTGGCCACAATTCCATCTTCGTTGGGCTTGTCCAAAAGAATCCCAAGCTGGGGAACTTGAAGTCAAATGCAGGAAAATGGCTATAAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCTGAGAGAAAAGCCCAGGAGATGACGGCTGCCATGGAATCATTAAAATCCGAGTTGCAAAGCGAGAAACAGTTAAGTATATCTGCTAGGAATGCTGCAAAAAGTGCAAGCAAAGAATGCGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGTTATTGTACTGTTGATATTGAGGGCGACCTGATGAAAAAATCCAACCAGAAAAGTCATCCTGCTTCAAGAAGGACTTCACATCGTTCGCTGCCACGCCCTAGTGAAGAGAATGACCTCTCGCTTTCTATCACAGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGGTGCCGATGGCCTGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGACTGAAGGCAAATTTCGACGCATTCGATCAACTATCCATATATGATGGTTATTTCAAGCCAGAGTGA 4251 43.43 MVSESWFRSLWKPPRKRDSTQKVVIGVLAFEIASLMSKLVHLWQSLSDKQVGRLREEINNSLGIKKLVSDDDEYIVRLICAEMTESLAHVAKSVARLGKKCSDPSLKNFEHVFDALIQIGADPYGWIYSWKKMEKKVKKMETFISVNANLYQEMEMLADLEQTLRRMKVNDDSDVITLVEFQKKVAWKQQEVKNLREMSLWKRTYDYTILLLARSLFTIFSRIKHVFEIEQSMDDGSNDSRDMSSDYIARSQSVSSLMQSMVHPSENGLTKFASGPLKRFTTKSGPISKTAKPNSFYSGPLGGSITKSGPISGPVSGTNRNFNSYSGPLTSSTIRSGPISGIDNKTNQKNWLVGGYSSLFNGKKSHQKPNRLTQVGPFKGCMISGPSSMVVNCHISSNGYHSEIVDPCNRANPYKQLLSAKCRLLDAPPETLGGAALALHYANVIIVIEKLAASPHLIGLDARDDLYNMLPAKVRASLRAALKPYAKSLASSAYDTGLAGEWNEAIAGILEWLAPLAHNMVRWQSERSFEQQNFVSRTNMLLVQTLFFANQEKTEAIITELLVGLNYLWRFAQSSNDRRPPQLYKTDIDQFEAARWRERERELSLLSCIIDTQIPEVTIDELVGSPQMATPKPRTTRSRSHRDIPDLEKMDAAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKIVVKTNSVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQSGPSNDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGGQGLSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALENATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTISGSGNMPYELSRQSSTGSFSSSPLRQPSGAFISQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSTHVHHNLFYDPTKHEGPLLPPAASLAPTLWPQFHLRWACPKESQAGELEVKCRKMAIKFSEMQKDKEIAERKAQEMTAAMESLKSELQSEKQLSISARNAAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIEGDLMKKSNQKSHPASRRTSHRSLPRPSEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANFDAFDQLSIYDGYFKPE 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20549716 20569578 - ClCG08G008030.2 Cla08g00816 278471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00816 1416 Coils Coil 1238 1272 - -
Cla08g00816 1416 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 646 803 - -
Cla08g00816 1416 Gene3D - 690 790 IPR011993 -
Cla08g00816 1416 PANTHER MYOTUBULARIN-RELATED 646 803 IPR030564 -
Cla08g00816 1416 PANTHER MYOTUBULARIN-RELATED 807 1415 IPR030564 -
Cla08g00816 1416 Coils Coil 178 198 - -
Cla08g00816 1416 Pfam Domain of unknown function (DUF3475) 27 83 IPR021864 GO:0045927
Cla08g00816 1416 Pfam Myotubularin-like phosphatase domain 807 1155 IPR010569 -
Cla08g00816 1416 Pfam Protein of unknown function (DUF668) 431 522 IPR007700 GO:0045927
Cla08g00816 1416 ProSiteProfiles Myotubularin phosphatase domain. 808 1213 IPR010569 -
Cla08g00816 1416 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 807 1415 - -
Cla08g00816 1416 SUPERFAMILY PH domain-like 678 802 - -
Cla08g00816 1416 CDD PTP-MTM-like 821 1115 - -
Cla08g00816 1416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 806 1217 IPR029021 -
Cla08g00816 1416 MobiDBLite consensus disorder prediction 1320 1345 - -
Cla08g00816 1416 ProSitePatterns Tyrosine specific protein phosphatases active site. 1001 1011 IPR016130 GO:0016311|GO:0016791
Cla08g00816 1416 SMART gram2001c 670 738 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00816 K18081 MTMR1_2; myotubularin-related protein 1/2 [EC:3.1.3.64 3.1.3.95] - csv:101204839 1175.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00816 Cla-Chr8:20549716 Cla09g00971 Cla-Chr9:10206646 5.23E-13 dispersed
Cla05g00812 Cla-Chr5:7944866 Cla08g00816 Cla-Chr8:20549716 6.45E-43 transposed
Cla10g01850 Cla-Chr10:34422637 Cla08g00816 Cla-Chr8:20549716 4.50E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g616 . Blo13g00941 . . . . . Bma08g01169 . . . . . . . Cpe13g00776 . Bhi04g01282 . . . Hepe02g2902 . Lcy10g1700 . . . . . . . . . Cone11ag1023 Cone18ag0555 Lsi08g00665 . . . . . . Bda15g00402 . . . . . . Cmo15g00495 . Cma15g00486 . Car15g00447 . . . . . . . . . Cla08g00816 Cam08g1250 Cec08g0835 Cco08g0946 Clacu08g0953 . Cre08g0754 . . Chy03g00887 Cme03g01177
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00816 Cla_Chr08 FPKM 52.907063 54.053459 24.625788 28.270081 27.623732 27.577564 27.936661 59.894932 61.184307 52.286072