Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00858 ATGGCGTCAGAGCGGCCGCTACTGATTATATCTCCAAAAACACCCAAGACTGTTTCTCACGATCTACAGAAACAGGAGTTGAACCAACCTGGATTGTTCTTCGCCATGGATTCTCGAAGCCCTAATGAGAATTCACCAAGTACGGAAATGAGTTATCGCTCATTCTCGCGGCGAAGTCAATCATCGCTGCAATCGAAGTCCTCAATTCGTGAAGTGGGTTCTAGTGATTTTGGATCGAGGCCTGTTCGTCATGGTTCTCGAGGTGCTGATTCTGAAGCATTGAGCATATCCCAGAAGGAGATCAGTGATGAAGATGCGAGGTTAATTTACATCGATGATCCCGAAAAGACAAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTTACTTTTCTGCCCAGGAATCTATTTGAACAATTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTCAATCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGAGTTTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCATTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGTCAGTTTCAACCCAAGAAATGGAAGAATATTAGAGTTGGTGAGATAATTAAGATTGGTGCAAATGACACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCCACAGGGGTTGCATATGTGCAAACTCTGAATTTGGATGGGGAATCAAATTTGAAAACCCGGTATGCAAAACAGGAGACGATGTCTAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATTTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCGAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACCAGTTGGGCTGTTGGTGTTGCTGTCTATGCTGGCCGTGAGACGAAAGCCATGCTTAACAGTTCTGGAGCTCCATCAAAAAGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTGTTATGCTCTCTCTCTTTCTTGTTGCTTTGTGTACCGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATCAGAAACAGGGAAGATTTGGACATTTTACCTTATTTCAGAAATAAGGACTTCTCAGAGGACCCACCTGAAACCTATAATTACTATGGATGGGGATTGGAGGCATTTTTTGTGTTCCTCATGTCGGTTATTGTGTTCCAGATCATGATCCCCATTTCACTATACATTTCAATGGAGGTTGTTCGTATTGGCCAGGCTTATTTCATGATCCGAGACACCCAAATGTATGACGAAACATCAAATTCAAGATTTCAGTGTCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACAGGTACCCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATATGGGGGGTCGATTATGGAGGTGAAAGTACCAATCCCCTCGACGAGCAGATTGGATACTCTGTTCGAGTGAATGGAAAGGTTTTGAGACCGAAATTGGTTGTCAAAACTGATCCTGAGCTTCTACACTTATCGAGAAGTGGAAAACACACCAAGGATGGAAGATACATTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCGATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCAGCAGCATATGGTTTTATGCTAATTGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGAGGATGTCGGTGATACTGGGGTGTCCTGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAACTCCATGCTCAAGGTGATGGGTGAAAATCTGAACATGGATATCATTCAATCGACTAAAGCTCATCTTTATTCATATTCATCAAAGGGTCTCAGAACACTCGTTATTGGGATGAAAGAACTCAGTTCCTCCGACTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCTGTATTGAAAACAATTTGTTCATATTAGGTGCCTCAGGCATTGAGGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAACCGCGGGAATTAAAGTATGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCTATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGCAGAATCATGCAAAAGGAAATTAGAAGATGCAATAATCATGACGAAGAAGCTTGCTACTGCCTCAGGCGTTGCACTGGATAATGAAAGAAGCACTGAAGTTGTAACAACTTCGGTTGCGTTGATCATTGATGGCAGCAGCCTCGTTCATATTCTTGACAGTGAACTGGAAGAACAGGTAAATGCTTATAAACCTGCAAATTCTATGTACTATGGAATGTCCAACGCTTACCTAGCTCTTGTATTTCAGCTTTTCCAACTATCTTGTAACTGTTCGGTGGTGTTATGTTGTCGAGTCGCCCCATTGCAAAAGGCTGGCATTGTTGCTCTTGTGAAGCGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCAAATGACGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGCATCAGTGGTTTAGAGGGTCGACAAGCTGTTATGGCATCGGATTTTGCCATGGGACAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACAACTTTTACAGAAATGCGGTATTTGTTCTTGTTCTATTCTGGTATGTGCTCTTTACCGGTTACTCGTTGACAACGGCGATCAACCAATGGAGTAGTGTGCTTTACTCAATAATCTATACTTGTTTGCCCACTATTGTTGTTGGAATTCTTGACAAGGACTTGGGAAGAAGGACTCTTCTTAGTTACCCTCAACTCTATGGGGCTGGCCATAGACAGGAAAGCTACAATTCAAAATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTGCATTTTGGGCTACCACTGTCGACATTTCAGGCCTCGGAGATCTGTGGCTACTCGCCACAGTCATTGTTGTCAACTTACATTTATCAATGGACGTGGTTCGATGGTATACTGTCACTCATGCTGTGATCTGGGGATCCACTGTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCTGGTTACTGGGCAATATATCATGTGGCGGGCACAGCATCTTTTTGGCTATGTTTGTTATCTATTGTCGTAGTAGCATTACTTCCTCGTTTCGTCGTAAAATACCTTTATCAGTCTTACTGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAGTTTGGATGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGAGCCCAGTCCTCAACAATCCTTCACAAATCAATTCTTCATCACCTCTAAGAAAATCAATGGCGAACGGACTAATGAAGCTGACCCGCTTCGCCTCTCGCTCTTCTCTCCTTCCCCGTCAATGGCACCAGCCCTCTTCATTTTCTCGTCTCGGTGCTCAGGAATTTCTCCAGACAGCTGAGGTGATGAGCGGAAGTGAGATGAATGTCTCTAAAAGAGTTGCTGTAACTACCCTTGACGAGGCGAAGAGGGCCTTACCAGATACTTATGCTACTGTAAGAGAGTTGCTTACTCCACTGAAGTCTGGCATTGCCAAACGATCTGCTGTGTATGTATGCGATATTCCTAAGGCTGCACTTGGAGCTAATGGTAAGGCTGTTTTATCTAGATGGCAGGATGCAAGGGCATCTGTTGTCAAATTTTCAACATTAGGTGTCACCAGTAGATGTGATATGAGTGCCAGAGGGCCGTGCTTTGCGAGGTTTATGTCATCAAAATCTTCAGAGAAACATGGACAAACTGCATCTGAGAGCAAAAAAGAAATATCAACAGTGGAGGATCCATTTGATGCTCCTACATATAATATACCAGAGAAGCCTGTTACATTTGCAGAGGGAGCTTCCTACAGTTTTATCATCCTTGCAGGGCTTGGAGTTGCAGCTGCTGCTGGATACGCAGTTTTTAAGGAGCTTATATTTCAACCAAAAGAGTACAAGATCTTTGACAAGGCTCTTAAAAGGATTCAAGATGACAGCCAGGTTAGGGTAAGGATTGGTTCCCCTATAACCGGTTATGGGCAAGAAACTAGAAATCGAGCTGCTCGCCAACGTATCCCTAATAGGGTATGGACTGACGAAGATGGTGTAGAGCGAGTAGAGGTGAATTTTTATATCCGTGGGCCCCATGGAGCTGGGAAAGTTTATACTGAGATGTTCAAGGATCAAGTCGACAAGCAGTGGAAGTTCACATACTTGATTGTCGAGGTGAAATCGCCTTCTCCGGCCCAATTGATCCTAGAATCTTATATGCCTGCCTGA 4719 42.78 MASERPLLIISPKTPKTVSHDLQKQELNQPGLFFAMDSRSPNENSPSTEMSYRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLIYIDDPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSILPLAFVLLVTAFKDAYEDWRRHRSDKIENNRLASVLVDGQFQPKKWKNIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIVMLSLFLVALCTVVCVLAAVWFIRNREDLDILPYFRNKDFSEDPPETYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMEVVRIGQAYFMIRDTQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGESTNPLDEQIGYSVRVNGKVLRPKLVVKTDPELLHLSRSGKHTKDGRYIHDFFLALAACNTIVPLITETSDPSVRLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMLKVMGENLNMDIIQSTKAHLYSYSSKGLRTLVIGMKELSSSDFDKWHMMFEEASTALIGRAAKLRKVASCIENNLFILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMTKKLATASGVALDNERSTEVVTTSVALIIDGSSLVHILDSELEEQVNAYKPANSMYYGMSNAYLALVFQLFQLSCNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQESYNSKLFWLTMIDTVWQSIAIFFIPLLAFWATTVDISGLGDLWLLATVIVVNLHLSMDVVRWYTVTHAVIWGSTVATVICVIVLDSILSLPGYWAIYHVAGTASFWLCLLSIVVVALLPRFVVKYLYQSYCPCDIQIAREADKFGWTRELGVVQTEMSPVLNNPSQINSSSPLRKSMANGLMKLTRFASRSSLLPRQWHQPSSFSRLGAQEFLQTAEVMSGSEMNVSKRVAVTTLDEAKRALPDTYATVRELLTPLKSGIAKRSAVYVCDIPKAALGANGKAVLSRWQDARASVVKFSTLGVTSRCDMSARGPCFARFMSSKSSEKHGQTASESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGLGVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQRIPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQLILESYMPA 1572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20979650 20993609 - ClCG08G008500.2 Cla08g00858 278513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00858 1572 CDD P-type_ATPase_APLT_Dnf-like 125 1096 - -
Cla08g00858 1572 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1236 - -
Cla08g00858 1572 Pfam Cation transport ATPase (P-type) 602 677 - -
Cla08g00858 1572 Gene3D - 596 729 IPR023299 GO:0000166
Cla08g00858 1572 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Cla08g00858 1572 SFLD p-type atpase 477 987 IPR044492 -
Cla08g00858 1572 Pfam E1-E2 ATPase 209 451 - -
Cla08g00858 1572 Pfam TIM21 1432 1558 IPR013261 GO:0005744|GO:0030150
Cla08g00858 1572 Gene3D Mitochondrial import inner membrane translocase subunit Tim21 1463 1570 IPR038552 -
Cla08g00858 1572 MobiDBLite consensus disorder prediction 1 22 - -
Cla08g00858 1572 Pfam Phospholipid-translocating P-type ATPase C-terminal 964 1203 IPR032630 -
Cla08g00858 1572 SUPERFAMILY HAD-like 480 977 IPR036412 -
Cla08g00858 1572 MobiDBLite consensus disorder prediction 38 74 - -
Cla08g00858 1572 SFLD Haloacid Dehalogenase 477 987 - -
Cla08g00858 1572 Pfam Phospholipid-translocating ATPase N-terminal 109 174 IPR032631 -
Cla08g00858 1572 Gene3D - 179 350 - -
Cla08g00858 1572 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1236 - -
Cla08g00858 1572 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 425 514 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g00858 1572 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 906 1019 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g00858 1572 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 123 873 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla08g00858 1572 MobiDBLite consensus disorder prediction 34 96 - -
Cla08g00858 1572 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166
Cla08g00858 1572 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1202 IPR023298 -
Cla08g00858 1572 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
Cla08g00858 1572 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Cla08g00858 1572 PRINTS P-type cation-transporting ATPase superfamily signature 936 955 - -
Cla08g00858 1572 Gene3D - 749 976 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00239 Cla-Chr7:2643070 Cla08g00858 Cla-Chr8:20979650 5.86E-173 dispersed
Cla08g00858 Cla-Chr8:20979650 Cla09g00071 Cla-Chr9:677972 0 dispersed
Cla08g00858 Cla-Chr8:20979650 Cla04g00644 Cla-Chr4:20843465 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00858 K14802 - csv:101212953 2244.93