Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00868 ATGATAGAAGAGGATAACAACAAAAGCCTCAGCACCGTCACTTCGTTTCTTTCTCATTTTCTGTGTTTGATTAGTTTCACTGGAGAGGAAGAGGATTTTCAATGGCTTACGGAAGAGACGGAGAATTTTGCTGGAAATTCTTTGGCGAAGATTATACGCAGATCGAACGTGGCGTTTCTTGTACGCAGAGTTTCAAATCTTAGTGTTAAGGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAAAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAACTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGACACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTAGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCAGCAGCATTCGATTCTCCATTCGGCATGTATCCCAATGATAACATCTCCGACTTCAGATTTGGTTCTCCATTTAATATGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA 2007 45.14 MIEEDNNKSLSTVTSFLSHFLCLISFTGEEEDFQWLTEETENFAGNSLAKIIRRSNVAFLVRRVSNLSVKDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEETLARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNMASIDYAAVDTALPKQDTSLWYL 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21125416 21129477 + ClCG08G008610.2 Cla08g00868 278523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00868 668 MobiDBLite consensus disorder prediction 489 508 - -
Cla08g00868 668 Pfam Ethylene insensitive 3 112 359 IPR006957 GO:0005634
Cla08g00868 668 MobiDBLite consensus disorder prediction 509 523 - -
Cla08g00868 668 MobiDBLite consensus disorder prediction 489 523 - -
Cla08g00868 668 Gene3D - 236 369 IPR023278 GO:0003700|GO:0005634
Cla08g00868 668 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 69 667 - -
Cla08g00868 668 Coils Coil 434 454 - -
Cla08g00868 668 Coils Coil 97 131 - -
Cla08g00868 668 SUPERFAMILY DNA-binding domain of EIN3-like 238 362 IPR023278 GO:0003700|GO:0005634
Cla08g00868 668 MobiDBLite consensus disorder prediction 130 155 - -
Cla08g00868 668 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 69 667 IPR006957 GO:0005634
Cla08g00868 668 Gene3D - 144 224 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01291 Cla-Chr3:27604275 Cla08g00868 Cla-Chr8:21125416 5.71E-132 dispersed
Cla03g01353 Cla-Chr3:28977447 Cla08g00868 Cla-Chr8:21125416 0 dispersed
Cla07g00914 Cla-Chr7:25194193 Cla08g00868 Cla-Chr8:21125416 1.06E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61554 PF04873 EIN3 4.30E-132 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00868 K14514 - csv:101214396 1096.65