Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00874 ATGGAGAAGTTCCCTGTTTATTCTCTTCATTCCCTGTTGATGTTTTTATTCATTTCGAGTCTCATCATTCCAAGTCAGCCTCTTCCGACTGAGACTCTAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACTGGTGTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGTGATCGGGTTTCCGGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCGCAACACTTTCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAATTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATGGTTAAGAGGATTCCTGATCTTTCTCAGCTGAGGAAGTTGGAGGTTCTAGATCTGTCAATCAACTTCTTTTCTGGCCAATTCCCAAGCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTATGAGGCTGGTGAGATACCGGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTAAAGGCATTGGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAATAATCTGAATAAGCTTGAGCTTTTTGTTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATGTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGAAACCTGAGGAATTTGGTGGTTTTTCAATTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCACTCAACAGCATTGACATATCAGAGAATCAATTTTCAGGGAACTTTCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTTTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGACTGCAAATCAATCCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGATAATGAATTCACTGGAACTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAAACTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAACAATGAATTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTCAAGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCCCATTAGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTGCGTTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAATCCTTGGAGAAGATGAAACTAAGTTCGATCGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCGGTGAGAATGGCCTGAATACCAGTCAGGAAGGGGACCAACAAGGAATTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAGTTTTAAAGAAGACAATTTGATAGGGAGTGGAGGAACAGGAAAAGTTTATCGGTTGGATCTGAAGAAAAATGGTGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGTAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGCCTGAACTGAACTGGTATCAGAGGTACAGGATTGCATTGGGAGCAGCCAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTTGATGAAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAACTGCTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGCTATATTGCTCCTGAGCTAGCGTATACTCTGAAAGTTTCCGAAAAAAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATGAATATGGAGAAGGAAAAGATATAGTCTACTGGATCTCAACACACCTCGATGACCGTGATAATGTCCTCAAGCTTCTAGATATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAGTGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 39.61 MEKFPVYSLHSLLMFLFISSLIIPSQPLPTETLALLRFKENLKDPTGVLHSWIDSESPCGFSGITCDRVSGKVVEISLENKSLSGEISPSISVLQSLATLSLASNHISGELPYQLINCSNLRVLNLTDNEMVKRIPDLSQLRKLEVLDLSINFFSGQFPSWVGNLTGLVSLGLGENEYEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLNNLNKLELFVNKLTGEIPPEISNLTLLQEIDMSANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLADCKSIQRFRINNNQMSGRIPDGVWALPNAKMIDFSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGKLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFALISSLNSLNLSSNKLTGIIPESLEKMKLSSIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGENGLNTSQEGDQQGIPKWKIASFHQVEIDADEICSFKEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQPELNWYQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDEDYEPKIADFGVAKVADQFQTASEHSSLAGTHGYIAPELAYTLKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSVSLNNSSNKNIKDFV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21166480 21171165 - ClCG08G008670.1 Cla08g00874 278529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00874 976 SMART LRR_typ_2 94 118 IPR003591 -
Cla08g00874 976 SMART LRR_typ_2 262 286 IPR003591 -
Cla08g00874 976 SMART LRR_typ_2 526 549 IPR003591 -
Cla08g00874 976 SMART LRR_typ_2 190 214 IPR003591 -
Cla08g00874 976 SMART LRR_typ_2 141 165 IPR003591 -
Cla08g00874 976 SMART LRR_typ_2 454 478 IPR003591 -
Cla08g00874 976 Gene3D Transferase(Phosphotransferase) domain 1 755 973 - -
Cla08g00874 976 Gene3D Ribonuclease Inhibitor 313 595 IPR032675 -
Cla08g00874 976 PRINTS Leucine-rich repeat signature 217 230 - -
Cla08g00874 976 PRINTS Leucine-rich repeat signature 526 539 - -
Cla08g00874 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 964 - -
Cla08g00874 976 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00874 976 SUPERFAMILY Protein kinase-like (PK-like) 677 952 IPR011009 -
Cla08g00874 976 SUPERFAMILY RNI-like 73 348 - -
Cla08g00874 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cla08g00874 976 PANTHER UNNAMED PRODUCT 11 962 - -
Cla08g00874 976 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Cla08g00874 976 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Cla08g00874 976 Gene3D Ribonuclease Inhibitor 180 238 IPR032675 -
Cla08g00874 976 SMART serkin_6 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00874 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515
Cla08g00874 976 SUPERFAMILY L domain-like 248 573 - -
Cla08g00874 976 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cla08g00874 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515
Cla08g00874 976 Pfam Leucine Rich Repeat 529 549 IPR001611 GO:0005515
Cla08g00874 976 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515
Cla08g00874 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Cla08g00874 976 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 11 962 - -
Cla08g00874 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Cla08g00874 976 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 964 - -
Cla08g00874 976 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Cla08g00874 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00724 Cla-Chr2:8746058 Cla08g00874 Cla-Chr8:21166480 0 dispersed
Cla08g00874 Cla-Chr8:21166480 Cla08g01193 Cla-Chr8:24848146 0 dispersed
Cla08g00874 Cla-Chr8:21166480 Cla11g01456 Cla-Chr11:28223851 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80739 PF00069 Pkinase 2.70E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00874 - - csv:101215749 1711.43