Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00876 ATGGGAAAATCCGCCGGCGACCGCCATTGCCGAACAACCATGCTCTTGAAGCCCTTCAACACCGTCGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTCTTCACTGGCTTCCTCGAATTTCCACCGGCATCCACTTCCCTCGCACCGCCCACCGACGATCTGAATCTCTCCGCACCCAAATTCGCTTCCGAACCTTTCACTGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTGGGTTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGGGGAATGGCTCTTCGTCGGGTTCGCTGCAGCAAGTCGGCGGCGACTCTAATTCGGAATGTGGGGGGCTGAAACTGAATCATGTTGCTGTTTTAGTGAAAGGATGGACTTGGATTCCTGATAATTTGGACAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCTGACGCCTTGTTCTTCGAAACCAGTACGCCTCCACGGCAGAGGCGCAGAGGAGATCCTCTTCGCATATACATGGATCTCGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTTTTCGTTAGTTATCATGCTGAAGATGACGTTCAGTCCACTTATGCAGGAGCACTATTTCACAACGGCGATACACTCGTTTATTGGTCATCGTCTCGTTGTCTTCCCCAAAGAAATCAGCTTGCTAGGAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAACGTAGGCGGACTCGATATGGCCCTTTCGATGTACCCTGAATGTGCAAATGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCACTACAAATTCGTTCTTGCAATTGAAAACACAATGACTGAGAGTTATGTAACGGAGAAGCTATTTTACGCACTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCCTTGGAAGAGTTAGCTTCTTACGTAAAGCGACTTGCAGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCATTAGGTAATTATAGAAGGACCCGAGCTGCGAGTCTCGACACGCTGCCATGTCGGGTGTGTGATGCTGTGAGCAGAAGGGGTGCCATGAAACTGCTTCTCTCTTTCAAATCACCATTGAAACTCCACGCTCTCATCCTTCCTTCACTCTCTTTCAACAATTCCTTCCTCAACTTTTCAACTCCTCTCCCTGCCCTCAAATTCCCCTTAACCAGACTCCCATCGACTCCCTCTCCAAAATCAATGGCCACCTCAATCTCTCACCTGAAACCACTGGTTCAAGTCAAGGACAACATTGAACTCACTGAAACCGAGGAGAAGATTTTCCATAGGCTTCTCGGGACTCTTCGTCACTTCAATCTCCAAACCCAGCTTCGTGTTGCCGGCGGTTGGGTTCGCGATAAGCTTCTCGGCAAAGATTGTTACGACATTGATATCGCTCTGGACAATATGTTGGGTAGCGAGTTTGTGGATAAGGTTAGAGAGTATTTGTTGACAGTTGGGGAAGAAGCCCAAGGAGTGGCTGTTATTCCATGGTATGAGAATCATGTTAACCCTGACCAATCAAAACATCTAGAAACAGCAAGGATGCGTATCTTTGATATATGGATTGATTTTGTAAACTTGAGGTGTGAGGAATACAGTGAGAATAGCCGTATTCCTACTAAGCAAAAGTTTGGGACGGCAGAGGAGGATGCATATAGAAGGGATTTAACAATCAATAGCTTGTTCTACAATATCAACTTGAGCATAGTTGAAGATTTTACGAAAAGAGGCATTTCGGATTTGAAGTTTGGGAAAATTGTGACTCCTTTACCTGCTAAAGCTACATTTATGGATGATCCACTTCGAGTCCTTCGAGCCATACGTGCAAGATTTGAATTCACATTGGACGACGAACTGAAAGAAGCTGCAGCATGTGAAGAAGTAAAGGCTGCTCTTGCTGCAAAGATTAGCAGAGAACGCATTGGAGTTGAAATCGATCTCATGATTGCTGGGAATCAGCCAGTTAAAGCAATGAGCTACATTTGTGATTTGACTTTATTTTGGACCGTCTTTACTCTTCCTTCTAACACTGAACCTGAAATATCTGAGGGTGAACAGAAAAGACTCTCCATGTATGCTTCTCTTTTCCTTCCATTCAGAAAATTCACATTTAAAGATAAGAAATCCAAAAAGATTCCTGTTGTCAACCATATTTTCCGGGATTCTCTCAAGCGAAAAGTTAGCGATGCTGAAACAGTTGTTAACGTACATCAGGCCTTGGAGAAGTTTTTGTCCTTGATTCCTCTTCTTGTATCTAAAGAGGAAATTCAACCCAATGGACTTGATTGGGGTGTTGAATGTGCAGACGTTCCTGTTACATCAAGGATTCGAGTATTGACTGGGCTTCTTTTGCGGGAAATTAAAGATTTCTGGCCTGTAGCTTTATTGATGGCCACCTTGTTATATCCTGCTAATGTAGACTATACACAAGATCTTTTAAACCGACACTTTGAACTGCAAAAGCGAAAAGAACTGTTTGACGTCGTTTACAACGAGATTGTTAAATTAGGTCTGGAAAATGTGTGGGAAGTGAAACCTCTGGTGAATGGGAAGGAGATTATGACCATTTTGCAGCTGAAAGCAGGAGGACCACTTGTTAGAGAATGGCAACAAAAAATACTTGCATGGCAGCTTGCACACCCGTCAGGAACGTCTGAAGAATGCCTCGATTGGATTCGGGAAATGAATTCGAAGCGTGTGAAGTTGGATGAATGA 2889 44.83 MGKSAGDRHCRTTMLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPPASTSLAPPTDDLNLSAPKFASEPFTDLITAFKKWDSQVGCDRFREKIGGGLGNGSSSGSLQQVGGDSNSECGGLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALSMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCDAVSRRGAMKLLLSFKSPLKLHALILPSLSFNNSFLNFSTPLPALKFPLTRLPSTPSPKSMATSISHLKPLVQVKDNIELTETEEKIFHRLLGTLRHFNLQTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGSEFVDKVREYLLTVGEEAQGVAVIPWYENHVNPDQSKHLETARMRIFDIWIDFVNLRCEEYSENSRIPTKQKFGTAEEDAYRRDLTINSLFYNINLSIVEDFTKRGISDLKFGKIVTPLPAKATFMDDPLRVLRAIRARFEFTLDDELKEAAACEEVKAALAAKISRERIGVEIDLMIAGNQPVKAMSYICDLTLFWTVFTLPSNTEPEISEGEQKRLSMYASLFLPFRKFTFKDKKSKKIPVVNHIFRDSLKRKVSDAETVVNVHQALEKFLSLIPLLVSKEEIQPNGLDWGVECADVPVTSRIRVLTGLLLREIKDFWPVALLMATLLYPANVDYTQDLLNRHFELQKRKELFDVVYNEIVKLGLENVWEVKPLVNGKEIMTILQLKAGGPLVREWQQKILAWQLAHPSGTSEECLDWIREMNSKRVKLDE 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21204407 21216679 + ClCG08G008690.2 Cla08g00876 278531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00876 962 Gene3D Beta Polymerase, domain 2 468 640 IPR043519 -
Cla08g00876 962 Gene3D - 643 942 - -
Cla08g00876 962 SUPERFAMILY Poly A polymerase C-terminal region-like 644 953 - -
Cla08g00876 962 CDD NT_ClassII-CCAase 487 640 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cla08g00876 962 Gene3D - 190 381 IPR038577 -
Cla08g00876 962 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 223 404 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cla08g00876 962 Pfam Poly A polymerase head domain 501 644 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cla08g00876 962 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 459 960 - -
Cla08g00876 962 SUPERFAMILY Nucleotidyltransferase 482 640 IPR043519 -
Cla08g00876 962 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 114 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00602 Cla-Chr2:6592714 Cla08g00876 Cla-Chr8:21204407 8.60E-12 dispersed
Cla08g00876 Cla-Chr8:21204407 Cla10g00033 Cla-Chr10:428225 9.91E-06 dispersed
Cla08g00876 Cla-Chr8:21204407 Cla05g01076 Cla-Chr5:11135376 6.72E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00876 - - csv:101216479 944.11