Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00876 ATGGGAAAATCCGCCGGCGACCGCCATTGCCGAACAACCATGCTCTTGAAGCCCTTCAACACCGTCGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTCTTCACTGGCTTCCTCGAATTTCCACCGGCATCCACTTCCCTCGCACCGCCCACCGACGATCTGAATCTCTCCGCACCCAAATTCGCTTCCGAACCTTTCACTGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTGGGTTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGGGGAATGGCTCTTCGTCGGGTTCGCTGCAGCAAGTCGGCGGCGACTCTAATTCGGAATGTGGGGGGCTGAAACTGAATCATGTTGCTGTTTTAGTGAAAGGATGGACTTGGATTCCTGATAATTTGGACAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCTGACGCCTTGTTCTTCGAAACCAGTACGCCTCCACGGCAGAGGCGCAGAGGAGATCCTCTTCGCATATACATGGATCTCGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTTTTCGTTAGTTATCATGCTGAAGATGACGTTCAGTCCACTTATGCAGGAGCACTATTTCACAACGGCGATACACTCGTTTATTGGTCATCGTCTCGTTGTCTTCCCCAAAGAAATCAGCTTGCTAGGAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAACGTAGGCGGACTCGATATGGCCCTTTCGATGTACCCTGAATGTGCAAATGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCACTACAAATTCGTTCTTGCAATTGAAAACACAATGACTGAGAGTTATGTAACGGAGAAGCTATTTTACGCACTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCCTTGGAAGAGTTAGCTTCTTACGTAAAGCGACTTGCAGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCATTAGGTAATTATAGAAGGACCCGAGCTGCGAGTCTCGACACGCTGCCATGTCGGGTGTGTGATGCTGTGAGCAGAAGGGGTGCCATGAAACTGCTTCTCTCTTTCAAATCACCATTGAAACTCCACGCTCTCATCCTTCCTTCACTCTCTTTCAACAATTCCTTCCTCAACTTTTCAACTCCTCTCCCTGCCCTCAAATTCCCCTTAACCAGACTCCCATCGACTCCCTCTCCAAAATCAATGGCCACCTCAATCTCTCACCTGAAACCACTGGTTCAAGTCAAGGACAACATTGAACTCACTGAAACCGAGGAGAAGATTTTCCATAGGCTTCTCGGGACTCTTCGTCACTTCAATCTCCAAACCCAGCTTCGTGTTGCCGGCGGTTGGGTTCGCGATAAGCTTCTCGGCAAAGATTGTTACGACATTGATATCGCTCTGGACAATATGTTGGGTAGCGAGTTTGTGGATAAGGTTAGAGAGTATTTGTTGACAGTTGGGGAAGAAGCCCAAGGAGTGGCTGTTATTCCATGGTATGAGAATCATGTTAACCCTGACCAATCAAAACATCTAGAAACAGCAAGGATGCGTATCTTTGATATATGGATTGATTTTGTAAACTTGAGGTGTGAGGAATACAGTGAGAATAGCCGTATTCCTACTAAGCAAAAGTTTGGGACGGCAGAGGAGGATGCATATAGAAGGGATTTAACAATCAATAGCTTGTTCTACAATATCAACTTGAGCATAGTTGAAGATTTTACGAAAAGAGGCATTTCGGATTTGAAGTTTGGGAAAATTGTGACTCCTTTACCTGCTAAAGCTACATTTATGGATGATCCACTTCGAGTCCTTCGAGCCATACGTGCAAGATTTGAATTCACATTGGACGACGAACTGAAAGAAGCTGCAGCATGTGAAGAAGTAAAGGCTGCTCTTGCTGCAAAGATTAGCAGAGAACGCATTGGAGTTGAAATCGATCTCATGATTGCTGGGAATCAGCCAGTTAAAGCAATGAGCTACATTTGTGATTTGACTTTATTTTGGACCGTCTTTACTCTTCCTTCTAACACTGAACCTGAAATATCTGAGGGTGAACAGAAAAGACTCTCCATGTATGCTTCTCTTTTCCTTCCATTCAGAAAATTCACATTTAAAGATAAGAAATCCAAAAAGATTCCTGTTGTCAACCATATTTTCCGGGATTCTCTCAAGCGAAAAGTTAGCGATGCTGAAACAGTTGTTAACGTACATCAGGCCTTGGAGAAGTTTTTGTCCTTGATTCCTCTTCTTGTATCTAAAGAGGAAATTCAACCCAATGGACTTGATTGGGGTGTTGAATGTGCAGACGTTCCTGTTACATCAAGGATTCGAGTATTGACTGGGCTTCTTTTGCGGGAAATTAAAGATTTCTGGCCTGTAGCTTTATTGATGGCCACCTTGTTATATCCTGCTAATGTAGACTATACACAAGATCTTTTAAACCGACACTTTGAACTGCAAAAGCGAAAAGAACTGTTTGACGTCGTTTACAACGAGATTGTTAAATTAGGTCTGGAAAATGTGTGGGAAGTGAAACCTCTGGTGAATGGGAAGGAGATTATGACCATTTTGCAGCTGAAAGCAGGAGGACCACTTGTTAGAGAATGGCAACAAAAAATACTTGCATGGCAGCTTGCACACCCGTCAGGAACGTCTGAAGAATGCCTCGATTGGATTCGGGAAATGAATTCGAAGCGTGTGAAGTTGGATGAATGA 2889 44.83 MGKSAGDRHCRTTMLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPPASTSLAPPTDDLNLSAPKFASEPFTDLITAFKKWDSQVGCDRFREKIGGGLGNGSSSGSLQQVGGDSNSECGGLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALSMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCDAVSRRGAMKLLLSFKSPLKLHALILPSLSFNNSFLNFSTPLPALKFPLTRLPSTPSPKSMATSISHLKPLVQVKDNIELTETEEKIFHRLLGTLRHFNLQTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGSEFVDKVREYLLTVGEEAQGVAVIPWYENHVNPDQSKHLETARMRIFDIWIDFVNLRCEEYSENSRIPTKQKFGTAEEDAYRRDLTINSLFYNINLSIVEDFTKRGISDLKFGKIVTPLPAKATFMDDPLRVLRAIRARFEFTLDDELKEAAACEEVKAALAAKISRERIGVEIDLMIAGNQPVKAMSYICDLTLFWTVFTLPSNTEPEISEGEQKRLSMYASLFLPFRKFTFKDKKSKKIPVVNHIFRDSLKRKVSDAETVVNVHQALEKFLSLIPLLVSKEEIQPNGLDWGVECADVPVTSRIRVLTGLLLREIKDFWPVALLMATLLYPANVDYTQDLLNRHFELQKRKELFDVVYNEIVKLGLENVWEVKPLVNGKEIMTILQLKAGGPLVREWQQKILAWQLAHPSGTSEECLDWIREMNSKRVKLDE 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21204407 21216679 + ClCG08G008690.2 Cla08g00876 278531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00876 962 Gene3D Beta Polymerase, domain 2 468 640 IPR043519 -
Cla08g00876 962 Gene3D - 643 942 - -
Cla08g00876 962 SUPERFAMILY Poly A polymerase C-terminal region-like 644 953 - -
Cla08g00876 962 CDD NT_ClassII-CCAase 487 640 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cla08g00876 962 Gene3D - 190 381 IPR038577 -
Cla08g00876 962 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 223 404 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cla08g00876 962 Pfam Poly A polymerase head domain 501 644 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cla08g00876 962 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 459 960 - -
Cla08g00876 962 SUPERFAMILY Nucleotidyltransferase 482 640 IPR043519 -
Cla08g00876 962 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 114 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00876 - - - csv:101216479 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00602 Cla-Chr2:6592714 Cla08g00876 Cla-Chr8:21204407 8.60E-12 dispersed
Cla08g00876 Cla-Chr8:21204407 Cla10g00033 Cla-Chr10:428225 9.91E-06 dispersed
Cla08g00876 Cla-Chr8:21204407 Cla05g01076 Cla-Chr5:11135376 6.72E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02423 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 2.0e-158 556.2
Cla04g01186 . 140 610 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.2e-151 531.6
Cla05g02423 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.9e-166 582.8
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.2e-160 563.5
Cla07g01024 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 5.2e-140 495.0
Cla05g02423 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.6e-138 487.6
Cla04g01186 . 114 612 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 5.1e-134 474.9
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.2e-183 639.0
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT1G49710 58.1 9.6e-179 623.6
Cla08g00876 . 20 404 Xyloglucan Fucosyltransferase1 AT1G71990 67.7 7.8e-160 560.5
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.7e-201 697.6
Cla04g01186 . 142 608 Xyloglucan Fucosyltransferase1 AT2G03220 66.2 1.6e-187 652.9
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-155 545.0
Cla04g01186 . 116 611 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 1.2e-144 510.4
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.3e-149 526.9
Cla05g02423 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.5e-153 538.1
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.8e-143 504.2
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.9e-186 647.1
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT3G19280 57.5 1.8e-177 619.4
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.7e-201 697.6
Cla04g01186 . 142 608 Xyloglucan Fucosyltransferase1 AT2G03220 66.2 1.6e-187 652.9
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.5e-153 538.1
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.8e-143 504.2
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.3e-149 526.9
Cla05g02423 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 2.0e-158 556.2
Cla04g01186 . 140 610 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.2e-151 531.6
Cla05g02423 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.9e-166 582.8
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.2e-160 563.5
Cla07g01024 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 5.2e-140 495.0
Cla05g02423 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.6e-138 487.6
Cla04g01186 . 114 612 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 5.1e-134 474.9
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-155 545.0
Cla04g01186 . 116 611 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 1.2e-144 510.4
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.9e-186 647.1
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT3G19280 57.5 1.8e-177 619.4
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.2e-183 639.0
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT1G49710 58.1 9.6e-179 623.6
Cla08g00876 . 20 404 Xyloglucan Fucosyltransferase1 AT1G71990 67.7 7.8e-160 560.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00876 Cla_Chr08 FPKM 0.0 0.104308 0.0 0.0 0.735311 0.634588 1.021761 0.050217 0.005444 0.010949