Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00894 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAAACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGGTACTTCCTTATCTTGTTTCCTTTCAATTTTATTTTTGGAAGGACTTCGTGTATCCTGTTGGTCTCAGTTGAATAGTCGCGAAGACAAAGCCCAAACGATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAAACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGTAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGTCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGCATTGATCCTGTGAACTGCATTGATGCTAGAGGAAGTCTTTTTCCCACTTACATTTTCTGTTCTATTTTGATGCACAAAGGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 1179 46.82 MLRLQWLSSSLVPSFNSELSPETVSNCKLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQSAFEPGSQTDSFASQTRAGGTSLSCFLSILFLEGLRVSCWSQLNSREDKAQTMLRLQWLSSSLVPSFNSELSPETVSNCKLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQSAFEPGSQTDSFASQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSIDPVNCIDARGSLFPTYIFCSILMHKGVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21408774 21414641 + ClCG08G008880.1 Cla08g00894 278549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00894 392 Pfam Whirly transcription factor 213 349 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00894 392 Gene3D Transcriptional Coactivator Pc4; Chain A 199 378 IPR009044 GO:0003677|GO:0006355
Cla08g00894 392 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 135 392 - -
Cla08g00894 392 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 135 392 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00894 392 SUPERFAMILY ssDNA-binding transcriptional regulator domain 205 392 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00894 - - - csv:101203474 417.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00178 Cla-Chr8:3559896 Cla08g00894 Cla-Chr8:21408774 7.69E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00894 . 186 392 Whirly Transcription Factor Family AT1G14410 61.7 8.1e-73 270.8
Cla08g00178 . 109 268 Whirly Transcription Factor Family AT1G71260 67.5 1.2e-59 226.9
Cla08g00894 . 172 392 Whirly Transcription Factor Family AT2G02740 61.5 1.3e-73 273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61557 PF08536 Whirly 8.40E-42 CL0609 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00894 Cla_Chr08 FPKM 0.0 0.0 0.923294 0.393659 0.172666 0.269616 0.0 0.0 0.1458 0.0