Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00894 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAAACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGGTACTTCCTTATCTTGTTTCCTTTCAATTTTATTTTTGGAAGGACTTCGTGTATCCTGTTGGTCTCAGTTGAATAGTCGCGAAGACAAAGCCCAAACGATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAAACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGTAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGTCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGCATTGATCCTGTGAACTGCATTGATGCTAGAGGAAGTCTTTTTCCCACTTACATTTTCTGTTCTATTTTGATGCACAAAGGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 1179 46.82 MLRLQWLSSSLVPSFNSELSPETVSNCKLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQSAFEPGSQTDSFASQTRAGGTSLSCFLSILFLEGLRVSCWSQLNSREDKAQTMLRLQWLSSSLVPSFNSELSPETVSNCKLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQSAFEPGSQTDSFASQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSIDPVNCIDARGSLFPTYIFCSILMHKGVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21408774 21414641 + ClCG08G008880.1 Cla08g00894 278549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00894 392 Pfam Whirly transcription factor 213 349 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00894 392 Gene3D Transcriptional Coactivator Pc4; Chain A 199 378 IPR009044 GO:0003677|GO:0006355
Cla08g00894 392 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 135 392 - -
Cla08g00894 392 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 135 392 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00894 392 SUPERFAMILY ssDNA-binding transcriptional regulator domain 205 392 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00178 Cla-Chr8:3559896 Cla08g00894 Cla-Chr8:21408774 7.69E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61557 PF08536 Whirly 8.40E-42 CL0609 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00894 - - csv:101203474 417.157