Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00903 ATGTCTAACATCTTGTTGTATGTTATGTCAACAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATGGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACTGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGCAAATATAAAGGACCATGTTTGGCCACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATCCCATCAGAAATAAACAACTACAGAATTTTGAAAGGCTTTTTAAGCCTCTCCATAATCTCGCCACGCACCTCACTGTTTGTAGAAAGAAGGAAGACAAAATCTTTTGCCTTCTCAAGTCCTTTCTCTTGTGTTTTCCTTTTACAGTTTGCTTCTTTGGTTCTTTTCACAGCTTGCTATCAAATTCTCACTTGTTATAACTAG 1350 46.0 MSNILLYVMSTNADVDEDEYWRNRAAEAQKMAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKSKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSEINNYRILKGFLSLSIISPRTSLFVERRKTKSFAFSSPFSCVFLLQFASLVLFTACYQILTCYN 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21501196 21506849 + ClCG08G008980.2 Cla08g00903 278558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00903 449 PANTHER PECTATE LYASE 18-RELATED 11 415 IPR045032 GO:0030570
Cla08g00903 449 PANTHER PECTATE LYASE 11 415 - -
Cla08g00903 449 SUPERFAMILY Pectin lyase-like 68 385 IPR011050 -
Cla08g00903 449 Gene3D - 76 400 IPR012334 -
Cla08g00903 449 SMART amb_all 151 348 IPR002022 -
Cla08g00903 449 Pfam Pectate lyase 161 342 IPR002022 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Cla08g00903 449 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Cla08g00903 449 Pfam Pectate lyase, N terminus 18 65 IPR007524 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00903 Cla-Chr8:21501196 Cla10g01416 Cla-Chr10:29217784 0 dispersed
Cla05g02468 Cla-Chr5:36113391 Cla08g00903 Cla-Chr8:21501196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00903 K01728 - csv:101217922 724.546