Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00910 ATGGCAAAGATCGAACGAACCCCAAATCGAGGATATTTGAATCGGTTTTTTCGGTGGTGTCAGAACGAACCGGATGGCCCACTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGTTTCTTACTGGAATGTTTGCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTCTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCACTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGAAACAAAGTTTGCCTTTATCTTGGTTTTAACAAATGGATAATATATCTTGAGTGA 3885 42.08 MAKIERTPNRGYLNRFFRWCQNEPDGPLCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRFLTGMFATVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSLGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARNKVCLYLGFNKWIIYLE 1294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21593105 21600300 - ClCG08G009050.2 Cla08g00910 278565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 918 1024 IPR035965 -
Cla08g00910 1294 CDD PAS 782 888 IPR000014 -
Cla08g00910 1294 SMART pas_2 773 839 IPR000014 -
Cla08g00910 1294 SMART pas_2 903 972 IPR000014 -
Cla08g00910 1294 MobiDBLite consensus disorder prediction 154 174 - -
Cla08g00910 1294 Pfam Phytochrome region 568 742 IPR013515 GO:0006355|GO:0009584
Cla08g00910 1294 ProSiteProfiles Histidine kinase domain profile. 1055 1274 IPR005467 -
Cla08g00910 1294 PANTHER TWO-COMPONENT HISTIDINE KINASE 156 1274 - -
Cla08g00910 1294 SMART HisKA_10 1048 1112 IPR003661 GO:0000155|GO:0007165
Cla08g00910 1294 Gene3D - 560 733 IPR043150 -
Cla08g00910 1294 Pfam PAS fold 224 340 IPR013654 GO:0006355
Cla08g00910 1294 PRINTS Phytochrome signature 866 883 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 585 605 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 703 721 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 288 310 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 793 808 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 886 906 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 388 407 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 473 494 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 670 689 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 774 790 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 884 IPR035965 -
Cla08g00910 1294 Coils Coil 552 572 - -
Cla08g00910 1294 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 373 545 IPR016132 -
Cla08g00910 1294 Gene3D - 1111 1276 IPR036890 -
Cla08g00910 1294 TIGRFAM sensory_box: PAS domain S-box protein 778 894 IPR000014 -
Cla08g00910 1294 Pfam PAS fold 774 888 IPR013767 GO:0006355
Cla08g00910 1294 Pfam PAS fold 904 1026 IPR013767 GO:0006355
Cla08g00910 1294 Gene3D PAS domain 229 476 - -
Cla08g00910 1294 CDD HATPase_Phy-like 1159 1270 IPR044767 -
Cla08g00910 1294 Gene3D PAS domain 766 903 - -
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 229 341 IPR035965 -
Cla08g00910 1294 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1160 1270 IPR003594 -
Cla08g00910 1294 SUPERFAMILY GAF domain-like 353 552 - -
Cla08g00910 1294 SMART HKATPase_4 1160 1272 IPR003594 -
Cla08g00910 1294 Gene3D - 354 716 IPR029016 -
Cla08g00910 1294 ProSiteProfiles PAS repeat profile. 771 841 IPR000014 -
Cla08g00910 1294 Pfam GAF domain 376 555 IPR003018 GO:0005515
Cla08g00910 1294 SMART gaf_1 373 565 IPR003018 GO:0005515
Cla08g00910 1294 SUPERFAMILY GAF domain-like 563 740 - -
Cla08g00910 1294 Gene3D PAS domain 918 1032 - -
Cla08g00910 1294 PANTHER PHYTOCHROME A 156 1274 - -
Cla08g00910 1294 ProSiteProfiles PAS repeat profile. 904 956 IPR000014 -
Cla08g00910 1294 CDD PAS 915 1026 IPR000014 -
Cla08g00910 1294 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1106 1267 IPR036890 -
Cla08g00910 1294 ProSitePatterns Phytochrome chromophore attachment site signature. 473 482 IPR013516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00910 K12120 PHYA; phytochrome A - csv:101208491 2149.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00291 Cla-Chr2:2825204 Cla08g00910 Cla-Chr8:21593105 0 dispersed
Cla05g00707 Cla-Chr5:6599070 Cla08g00910 Cla-Chr8:21593105 0 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla06g00204 Cla-Chr6:2419644 3.39E-08 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla08g00913 Cla-Chr8:21638114 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00064 . 5 1220 Histidine Kinase Gene Family AT2G17820 64.2 0.0e+00 1453.0
Cla11g00097 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cla01g00654 . 24 981 Histidine Kinase Gene Family AT2G01830 67.6 0.0e+00 1238.8
Cla02g00275 . 279 1266 Histidine Kinase Gene Family AT2G01830 51.8 1.9e-269 926.0
Cla06g00204 . 97 1043 Histidine Kinase Gene Family AT2G01830 52.6 4.4e-263 904.8
Cla02g00917 . 304 1273 Histidine Kinase Gene Family AT2G01830 50.8 1.2e-260 896.7
Cla05g01652 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.8e-292 1000.0
Cla08g00910 . 156 1275 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1829.3
Cla08g00913 . 12 1104 Histidine Kinase Gene Family AT1G09570 71.7 0.0e+00 1574.7
Cla05g00707 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Cla02g00291 . 97 1176 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1180.6
Cla05g00707 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cla03g00672 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Cla08g00910 . 176 1209 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cla02g00291 . 105 1133 Histidine Kinase Gene Family AT2G18790 51.7 4.8e-308 1054.3
Cla08g00913 . 12 1038 Histidine Kinase Gene Family AT2G18790 50.9 9.4e-304 1040.0
Cla02g00291 . 91 1180 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1335.9
Cla05g00707 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Cla08g00910 . 164 1269 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.8
Cla05g00707 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Cla03g00672 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Cla08g00910 . 163 1270 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1135.6
Cla02g00291 . 105 1179 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1095.5
Cla03g00672 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Cla05g00707 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00910 Cla_Chr08 FPKM 11.967362 14.586576 25.184765 27.075474 12.839197 14.446155 14.358013 20.045416 22.794645 22.8473