Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00910 ATGGCAAAGATCGAACGAACCCCAAATCGAGGATATTTGAATCGGTTTTTTCGGTGGTGTCAGAACGAACCGGATGGCCCACTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGTTTCTTACTGGAATGTTTGCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTCTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCACTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGAAACAAAGTTTGCCTTTATCTTGGTTTTAACAAATGGATAATATATCTTGAGTGA 3885 42.08 MAKIERTPNRGYLNRFFRWCQNEPDGPLCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRFLTGMFATVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSLGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARNKVCLYLGFNKWIIYLE 1294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21593105 21600300 - ClCG08G009050.2 Cla08g00910 278565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 918 1024 IPR035965 -
Cla08g00910 1294 CDD PAS 782 888 IPR000014 -
Cla08g00910 1294 SMART pas_2 773 839 IPR000014 -
Cla08g00910 1294 SMART pas_2 903 972 IPR000014 -
Cla08g00910 1294 MobiDBLite consensus disorder prediction 154 174 - -
Cla08g00910 1294 Pfam Phytochrome region 568 742 IPR013515 GO:0006355|GO:0009584
Cla08g00910 1294 ProSiteProfiles Histidine kinase domain profile. 1055 1274 IPR005467 -
Cla08g00910 1294 PANTHER TWO-COMPONENT HISTIDINE KINASE 156 1274 - -
Cla08g00910 1294 SMART HisKA_10 1048 1112 IPR003661 GO:0000155|GO:0007165
Cla08g00910 1294 Gene3D - 560 733 IPR043150 -
Cla08g00910 1294 Pfam PAS fold 224 340 IPR013654 GO:0006355
Cla08g00910 1294 PRINTS Phytochrome signature 866 883 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 585 605 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 703 721 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 288 310 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 793 808 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 886 906 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 388 407 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 473 494 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 670 689 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 PRINTS Phytochrome signature 774 790 IPR001294 GO:0006355|GO:0009584
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 884 IPR035965 -
Cla08g00910 1294 Coils Coil 552 572 - -
Cla08g00910 1294 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 373 545 IPR016132 -
Cla08g00910 1294 Gene3D - 1111 1276 IPR036890 -
Cla08g00910 1294 TIGRFAM sensory_box: PAS domain S-box protein 778 894 IPR000014 -
Cla08g00910 1294 Pfam PAS fold 774 888 IPR013767 GO:0006355
Cla08g00910 1294 Pfam PAS fold 904 1026 IPR013767 GO:0006355
Cla08g00910 1294 Gene3D PAS domain 229 476 - -
Cla08g00910 1294 CDD HATPase_Phy-like 1159 1270 IPR044767 -
Cla08g00910 1294 Gene3D PAS domain 766 903 - -
Cla08g00910 1294 SUPERFAMILY PYP-like sensor domain (PAS domain) 229 341 IPR035965 -
Cla08g00910 1294 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1160 1270 IPR003594 -
Cla08g00910 1294 SUPERFAMILY GAF domain-like 353 552 - -
Cla08g00910 1294 SMART HKATPase_4 1160 1272 IPR003594 -
Cla08g00910 1294 Gene3D - 354 716 IPR029016 -
Cla08g00910 1294 ProSiteProfiles PAS repeat profile. 771 841 IPR000014 -
Cla08g00910 1294 Pfam GAF domain 376 555 IPR003018 GO:0005515
Cla08g00910 1294 SMART gaf_1 373 565 IPR003018 GO:0005515
Cla08g00910 1294 SUPERFAMILY GAF domain-like 563 740 - -
Cla08g00910 1294 Gene3D PAS domain 918 1032 - -
Cla08g00910 1294 PANTHER PHYTOCHROME A 156 1274 - -
Cla08g00910 1294 ProSiteProfiles PAS repeat profile. 904 956 IPR000014 -
Cla08g00910 1294 CDD PAS 915 1026 IPR000014 -
Cla08g00910 1294 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1106 1267 IPR036890 -
Cla08g00910 1294 ProSitePatterns Phytochrome chromophore attachment site signature. 473 482 IPR013516 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00291 Cla-Chr2:2825204 Cla08g00910 Cla-Chr8:21593105 0 dispersed
Cla05g00707 Cla-Chr5:6599070 Cla08g00910 Cla-Chr8:21593105 0 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla06g00204 Cla-Chr6:2419644 3.39E-08 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla08g00913 Cla-Chr8:21638114 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00910 K12120 - csv:101208491 2149.01