Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00911 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCACTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGGTAG 897 47.38 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21618561 21621266 + ClCG08G009060.1 Cla08g00911 278566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00911 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983
Cla08g00911 298 Coils Coil 224 244 - -
Cla08g00911 298 MobiDBLite consensus disorder prediction 86 165 - -
Cla08g00911 298 SMART finulus 183 233 IPR011598 GO:0046983
Cla08g00911 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Cla08g00911 298 MobiDBLite consensus disorder prediction 104 125 - -
Cla08g00911 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Cla08g00911 298 PANTHER BNAC05G07950D PROTEIN 1 297 - -
Cla08g00911 298 Gene3D - 174 246 IPR036638 GO:0046983
Cla08g00911 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 297 IPR024097 GO:0006355
Cla08g00911 298 MobiDBLite consensus disorder prediction 130 150 - -
Cla08g00911 298 CDD bHLH_AtBPE_like 167 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00509 Cla-Chr2:5100515 Cla08g00911 Cla-Chr8:21618561 6.77E-45 dispersed
Cla08g00911 Cla-Chr8:21618561 Cla09g00792 Cla-Chr9:8020731 7.45E-44 dispersed
Cla08g00911 Cla-Chr8:21618561 Cla06g01622 Cla-Chr6:29735789 3.98E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61558 PF00010 HLH 2.50E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00911 - - csv:101209222 538.11