Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00913 ATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCACCGCCGCCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCACGATGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCGTCTATGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAATTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACCACAATTAGTGATCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATCTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGATTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGACATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3315 42.11 MQSFNPTLSNPGPSFDYSTSIHLTTNPTAAPPPATAATTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPVYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRIMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSSCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGLEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRHVREADKSSFIITLEFAACS 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21638114 21644848 + ClCG08G009080.1 Cla08g00913 278568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00913 1104 PIRSF Phytochrome_conventional 2 1104 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cla08g00913 1104 SUPERFAMILY GAF domain-like 169 376 - -
Cla08g00913 1104 SUPERFAMILY PYP-like sensor domain (PAS domain) 744 852 IPR035965 -
Cla08g00913 1104 ProSiteProfiles Histidine kinase domain profile. 883 1102 IPR005467 -
Cla08g00913 1104 SUPERFAMILY GAF domain-like 387 564 - -
Cla08g00913 1104 CDD PAS 741 854 IPR000014 -
Cla08g00913 1104 SUPERFAMILY PYP-like sensor domain (PAS domain) 603 710 IPR035965 -
Cla08g00913 1104 Gene3D PAS domain 592 728 - -
Cla08g00913 1104 ProSitePatterns Phytochrome chromophore attachment site signature. 289 298 IPR013516 -
Cla08g00913 1104 Pfam Phytochrome region 392 566 IPR013515 GO:0006355|GO:0009584
Cla08g00913 1104 TIGRFAM sensory_box: PAS domain S-box protein 604 720 IPR000014 -
Cla08g00913 1104 PRINTS Phytochrome signature 204 223 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 104 126 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 600 616 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 494 513 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 527 545 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 712 732 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 409 429 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 619 634 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 692 709 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 PRINTS Phytochrome signature 289 310 IPR001294 GO:0006355|GO:0009584
Cla08g00913 1104 Pfam GAF domain 190 379 IPR003018 GO:0005515
Cla08g00913 1104 Pfam PAS fold 40 155 IPR013654 GO:0006355
Cla08g00913 1104 Gene3D - 920 1096 IPR036890 -
Cla08g00913 1104 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 1103 - -
Cla08g00913 1104 SMART HKATPase_4 989 1102 IPR003594 -
Cla08g00913 1104 PANTHER PHYTOCHROME A 9 1103 - -
Cla08g00913 1104 Pfam PAS fold 730 854 IPR013767 GO:0006355
Cla08g00913 1104 Pfam PAS fold 600 714 IPR013767 GO:0006355
Cla08g00913 1104 Gene3D PAS domain 44 292 - -
Cla08g00913 1104 SMART pas_2 729 799 IPR000014 -
Cla08g00913 1104 SMART pas_2 599 665 IPR000014 -
Cla08g00913 1104 Gene3D - 384 557 IPR043150 -
Cla08g00913 1104 Gene3D - 170 540 IPR029016 -
Cla08g00913 1104 SUPERFAMILY PYP-like sensor domain (PAS domain) 45 159 IPR035965 -
Cla08g00913 1104 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 933 1098 IPR036890 -
Cla08g00913 1104 ProSiteProfiles PAS repeat profile. 597 667 IPR000014 -
Cla08g00913 1104 ProSiteProfiles PAS repeat profile. 730 782 IPR000014 -
Cla08g00913 1104 Coils Coil 376 396 - -
Cla08g00913 1104 SMART gaf_1 189 389 IPR003018 GO:0005515
Cla08g00913 1104 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 189 369 IPR016132 -
Cla08g00913 1104 CDD PAS 608 714 IPR000014 -
Cla08g00913 1104 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 989 1099 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00913 Cla-Chr8:21638114 Cla11g00097 Cla-Chr11:1275702 4.65E-08 dispersed
Cla08g00910 Cla-Chr8:21593105 Cla08g00913 Cla-Chr8:21638114 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00913 K12120 - csv:101219585 1933.3