Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00926 ATGGGCACATTGTGCAAAGAAAATCCATCTCTAAACTTCGAGTGGACTACAAGCATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCACTCTCCAATGGTAATCTTCCTCTACTTCACTCATCTTCCTCTCCTTGTTCTAAATCCTATCTTCTTCCTTCTTCCATTTCAGGATTCCCCATTCCTATCCGCTCAAGACTCCGTGTTTTCTGCTCTGGCAACAACATCCACATTTCCAATCAACAACCCTGTTATTGGGCGAGCGGAGTTAACAGACGAGAAATTATGCTAGGGATTGGATTGACTGCGTTTTCTTTTCAAGAAGTTGTTTCTAATGCCCTAGCTGAGAGTGTTGTCGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAATTCAGATTGGTAATTCCTCAAGATTGGCAAGTGGGTAATGGTGAGCCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGGAACTTCAAGTTCCAATGGTATTTTCTTGGATTTTCTTACATTTTCTCTCACCCGCTTCATTTTTGAATATTTTGATGGACTGAATTTTGGTTTAGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCATTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCTAAACTAATAGACTGTAGATCATCAAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAAGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAACGGTTGGTACAATAGACTTTACACCATAACAGGACAGTATGCAGATGAAGAATCGGAGAACTATGGTTCCAAAATTGAGAAGGTTGTCAATTCCTTCACTTTCTTTTGA 963 43.09 MGTLCKENPSLNFEWTTSMASLPSPSAVIQRPRSWRFSESSLSNGNLPLLHSSSSPCSKSYLLPSSISGFPIPIRSRLRVFCSGNNIHISNQQPCYWASGVNRREIMLGIGLTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGFKSVTAFFPQGTSSSNGIFLDFLTFSLTRFIFEYFDGLNFGLVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESENYGSKIEKVVNSFTFF 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21802203 21805338 - ClCG08G009180.2 Cla08g00926 278581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00926 320 PANTHER - 88 178 - -
Cla08g00926 320 Pfam PsbP 205 319 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cla08g00926 320 PANTHER - 205 319 - -
Cla08g00926 320 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 126 319 - -
Cla08g00926 320 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC 205 319 - -
Cla08g00926 320 SUPERFAMILY Mog1p/PsbP-like 136 319 IPR016123 -
Cla08g00926 320 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC 88 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00926 - - - csv:101211525 407.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g46 . . . . . . . . Cmo05g00981 . . . . . . . . Bhi04g01203 . . . . . . Cla08g00926 Cam08g1371 Cec08g0954 Cco08g1073 Clacu08g1079 . Cre08g0863 . . . . . . . Cme03g01326 . Blo18g00732 . Bda01g01573 . . . . . . . . Cma05g00960 Car05g00843 . Cpe11g00773 . . . . . . . . . . . . . . . Lsi08g00769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011237 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00926 Cla_Chr08 FPKM 12.537836 12.621714 13.61717 14.161598 21.26623 19.04829 22.691082 10.989081 11.192326 11.716987