Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g00927 | ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAACGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGGGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGAACGGTTACATTAATACTCTTTATAAGACTTCTACGTTGATTTTGTGGTATAAGCTCACTGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGCACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGCGAATCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGTAA | 1140 | 48.86 | MSGSETGVITSREPFNVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGENGYINTLYKTSTLILWYKLTDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWK | 379 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21810985 | 21815086 | + | ClCG08G009190.1 | Cla08g00927 | 278582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g00927 | 379 | CDD | DUF296 | 201 | 305 | IPR005175 | - | |
| Cla08g00927 | 379 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 | 9 | 378 | - | - | |
| Cla08g00927 | 379 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 201 | 305 | IPR005175 | - | |
| Cla08g00927 | 379 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 202 | 307 | - | - | |
| Cla08g00927 | 379 | MobiDBLite | consensus disorder prediction | 340 | 373 | - | - | |
| Cla08g00927 | 379 | MobiDBLite | consensus disorder prediction | 122 | 142 | - | - | |
| Cla08g00927 | 379 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 9 | 378 | IPR039605 | GO:0003680 | |
| Cla08g00927 | 379 | MobiDBLite | consensus disorder prediction | 72 | 159 | - | - | |
| Cla08g00927 | 379 | ProSiteProfiles | PPC domain profile profile. | 186 | 326 | IPR005175 | - | |
| Cla08g00927 | 379 | MobiDBLite | consensus disorder prediction | 329 | 379 | - | - | |
| Cla08g00927 | 379 | Gene3D | - | 199 | 327 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla08g00927 | Cla11g01851 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01665 | Cla-Chr2:31493053 | Cla08g00927 | Cla-Chr8:21810985 | 4.32E-42 | dispersed | |
| Cla08g00927 | Cla-Chr8:21810985 | Cla11g01851 | Cla-Chr11:32052269 | 5.64E-125 | dispersed | |
| Cla08g00927 | Cla-Chr8:21810985 | Cla06g00354 | Cla-Chr6:4478870 | 1.47E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g00927 | - | - | csv:101211767 | 545.043 |