Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00934 ATGAGTAAAGGACAAAAGAAAACATTGAGGGTTTTGATTTCCCTACAAGAAATGGGCGGCGGTGGCGGTAGCAGCGGTGTTGTGCCAAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCTCTGTTTGTGCAATCATCATTCTTATTTCCATTATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTCCAAAAAAGGAAAAAGAAAGCATTGTATGAAGCGCTTGAGAAAGTTAAAGGCGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTCGGACAAAATTATATTGCTAAAGTTTGCATACCCTCAAAATATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGACTCTACCTAAAAGCTCCCACGGCCTCGAGCCTCAAGATCACGACGAAGAGACTACAGATCATCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCGTCTTGGTGGCGGTGCTTCCGTAGCAAGTTGCAAAACAGGGTATACACAACTTATATCTTTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTCCTCCATGTTGTATTTAGCGGCATAACCATGACTCTTGGGAGATTGAAAATTCGTGGGTGGAAGGTTTGGGAAAAACAGACTGAACAAGAACATGACGCCATGAACGATCCTACAAGGTTCAGACTTACTCACGAGACTTCCTTTGTTAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTTTGGAGGCAATTCCTGAGGTCCGTTAGTAGGGCAGATTACTTGTCTCTTAGACATGGTTTTGTCACTGTTCATTTAGCCCCAGGGAGTAAATTTGACTTTCAAAATCCTCTGCTATGGGCATCAATGGTGCTTTTTCTACTTCTCAATGTTAGTGGGTGGCAAGTTATGTTTTGGGTGTCCATATTTCCTCTAGTGGTGATCTTAGCCGTTGGAACGAAGCTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAGGAAAGGCATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCTGATAGACACTTTTGGTTTAGTTGGCCGGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGATGGGATCAACGATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTAAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGGGGAAAGCCCGATTCAACGCCGATGCGAACTTTAGGCGGCAGCGGCGGCGGAGGAGGAGGAAGCCCCCCCGAGTCACCGACGCACTCCCCGCGTGAATTCCAACATCAATTGGTCTCTCAACCGTTGCCAACCGACGTCGAAGCCTCCACCATTCCTTCAGCCAACATAATGACCACCATTGACTTGACTTCACAAATTGTTCGCATATCTTCAACTATAAGGGTGGAAAATGAAGGGACTGATGTGGTGTCTGAAGTACTGTTAACCTTTCCCGAGGAACAAGCAAAACACTTGGCTCATATCCAAGCAACATTGAATGAAGGAAAAGGAAAAACCAAAGGATCTGCTATAAAGTTTCCTGTCGATGTTGTTTATCCCAAGGAAATGCCTCCAGCATTGAAATTTTACTCAGTGTCTCTACCAAAGGGACTAAACAAGGGTGATAGCTTGACTTTTGATGTGTTAGCTGTTTTCACTCATGTTCTGCGTCCATTCCCAGAGACAATCACTCAAGCTGATGTTCAGTTTGTAGTGTTTCTTGACAGTGCATACTTTTTGTCTCCTTATACTGTCAAGGTCCAGTCACTAAGTGTTAAATTGCCCGAAGCAAGAATTGAGTCTTATACAAAATTGGAAAATACGAAGATTCATGGTTCTGAGATCAAATATGGTCCTTATGAGAATCTTCCCCCATATTCATTTACACCCATACGCTTTCATTTTGAAAACAATAAGCCATTTCCTGTTGCTCAAGAGCTTGTCCGTGAGATAGAAATTTCTCACTGGGGCAGCATTCAAATAACAGAGCATTATAATCTTGTTCATGGTGGTGCTCAAAGTAGGGGGGAATTTTCCAGGCTTGATTATCAGGCCAGACCTTATGCAAAAGGTGCTTCAGCATTTAGGAATCTTGTTGCAAAACTACCACCTAGAACTCATTCAGTATACTATAGAGATGAAATTGGAAACATCTCTACATCTCATCTATGGGGTGATTCTAAAAAGACAGAGCTGGAGATTGAACCTAGATATCCAATGTTTGGTGGTTGGAGAACTTCTTTTACTATTGGATACAGTTTGCCACTTCAGGATTTTCTATTTCAGGATCAGGGAAAACGTTTTCTCAACATCTCTTTTGGTTCTCCTATAAATGACGTTGTGATTGATAGGCTTATTGTCAGGGTTGTTTTACCCGAGGGCTCCAGTGATATATCTGTGTATGTTCCATTTTCTCATAAACAGTGGCATGAGACAAAATTTTCACACTTGGACATTGAAGGTAGACCAGTGGTTGTTCTGGAGAAGGAAAATGTTGTGCCAGAGCATAATCAGCATTTCCAGGTCTACTACAAATTCAACAGCATTTCAATGCTTAGGGAGCCTCTGATGTTGATTTTTGGATTCTTTATCCTTTTTGTCTCATGCATCATTTATATGCATTCTGACATGTCAATTTCGAAGTCTTCTGCTTCTTATTTAGCAAAACTACAATGGGATGAGGTGCAAACTGTGATTCAACAAGTTCAGAATGTTATCAACAGATGCTTAACCATACATGATAAACTGGAAGCATCTTTGCGTGATCTTTCTCGAACTGGTGACGTCCAAGCTTGTAAAGCAGTTCGCAAAACAGTTGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGCCTTTGATTTCATTCTTGCAGTCTTCCCAGCAGGCCACCCATATATTGCCCAAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAAGAGAGGTTGGTTGCGAAACACACAACGGTGGTGGACTGCTATGAGAAGAAGCTTGGGGGACGTGAAATTGAGAACAGAGTTGCTTCACAACAGCAAAGAATTACAACATTAAGGCAAGAAGTTGACGATCTTCTCGAGGATGCCCAATGGCCGGATTGA 3159 42.1 MSKGQKKTLRVLISLQEMGGGGGSSGVVPSRELDQTPTWAVASVCAIIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGTLPKSSHGLEPQDHDEETTDHHRRLLWYEHRRRLGGGASVASCKTGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFLRSVSRADYLSLRHGFVTVHLAPGSKFDFQNPLLWASMVLFLLLNVSGWQVMFWVSIFPLVVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPDSTPMRTLGGSGGGGGGSPPESPTHSPREFQHQLVSQPLPTDVEASTIPSANIMTTIDLTSQIVRISSTIRVENEGTDVVSEVLLTFPEEQAKHLAHIQATLNEGKGKTKGSAIKFPVDVVYPKEMPPALKFYSVSLPKGLNKGDSLTFDVLAVFTHVLRPFPETITQADVQFVVFLDSAYFLSPYTVKVQSLSVKLPEARIESYTKLENTKIHGSEIKYGPYENLPPYSFTPIRFHFENNKPFPVAQELVREIEISHWGSIQITEHYNLVHGGAQSRGEFSRLDYQARPYAKGASAFRNLVAKLPPRTHSVYYRDEIGNISTSHLWGDSKKTELEIEPRYPMFGGWRTSFTIGYSLPLQDFLFQDQGKRFLNISFGSPINDVVIDRLIVRVVLPEGSSDISVYVPFSHKQWHETKFSHLDIEGRPVVVLEKENVVPEHNQHFQVYYKFNSISMLREPLMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQVQNVINRCLTIHDKLEASLRDLSRTGDVQACKAVRKTVDASLKELSKELKPLISFLQSSQQATHILPKVEELVAKERDLQERLVAKHTTVVDCYEKKLGGREIENRVASQQQRITTLRQEVDDLLEDAQWPD 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21860892 21879107 - ClCG08G009250.2 Cla08g00934 278589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00934 1052 Pfam Ribophorin I 468 891 IPR007676 GO:0006486|GO:0016021
Cla08g00934 1052 Coils Coil 1020 1047 - -
Cla08g00934 1052 Pfam Mlo family 381 417 IPR004326 GO:0006952|GO:0016021
Cla08g00934 1052 Pfam Mlo family 31 381 IPR004326 GO:0006952|GO:0016021
Cla08g00934 1052 MobiDBLite consensus disorder prediction 402 446 - -
Cla08g00934 1052 PANTHER RIBOPHORIN I 461 1029 IPR007676 GO:0006486|GO:0016021
Cla08g00934 1052 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 461 1029 - -
Cla08g00934 1052 MobiDBLite consensus disorder prediction 402 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00934 K12666 OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I) - csv:101217990 1076.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02147 Cla-Chr5:33085518 Cla08g00934 Cla-Chr8:21860892 2.05E-168 dispersed
Cla08g00934 Cla-Chr8:21860892 Cla10g00013 Cla-Chr10:235056 7.38E-143 dispersed
Cla08g00934 Cla-Chr8:21860892 Cla01g02044 Cla-Chr1:34955812 4.76E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g64 . . . . . . . . Cmo05g00988 . . . . . . . . . . . . . . . Cla08g00934 Cam08g1381 Cec08g0962 Cco08g1081 Clacu08g1088 . Cre08g0871 Cone4ag2032 . . . . . . . . Blo18g00738 . Bda01g01568 Bpe02g01762 Bpe05g00178 Bma01g00695 . . . . . . Car05g00852 . Cpe11g00780 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01826 . 74 609 MLO family AT5G53760 70.7 2.2e-216 748.8
Cla11g01772 CCT 8 672 MLO family AT5G53760 56.7 4.3e-196 681.4
Cla09g01833 . 44 516 MLO family AT5G53760 56.1 8.8e-149 524.2
Cla09g01826 . 74 609 MLO family AT1G26700 69.5 8.7e-210 726.9
Cla11g01772 CCT 4 653 MLO family AT1G26700 55.6 2.0e-190 662.5
Cla09g01833 . 44 516 MLO family AT1G26700 54.7 6.5e-141 498.0
Cla03g00220 . 8 536 MLO family AT2G39200 63.8 1.3e-192 669.8
Cla05g02133 . 7 499 MLO family AT2G39200 67.7 8.5e-192 667.2
Cla02g02050 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Cla02g02050 . 1 416 MLO family AT1G61560 65.9 6.2e-160 560.8
Cla03g00220 . 1 416 MLO family AT1G61560 66.3 2.9e-157 552.0
Cla05g02133 . 7 408 MLO family AT1G61560 65.2 9.5e-153 537.0
Cla01g02044 . 28 427 MLO family AT1G61560 50.6 4.9e-109 391.7
Cla01g02044 . 18 495 MLO family AT2G17430 61.1 3.5e-163 572.0
Cla10g00013 . 29 549 MLO family AT2G17430 56.2 4.0e-151 531.9
Cla01g02044 . 7 572 MLO family AT2G17480 61.3 4.9e-187 651.4
Cla10g00013 . 5 633 MLO family AT2G17480 53.6 6.7e-168 587.8
Cla03g00220 . 8 463 MLO family AT2G17480 52.6 2.4e-125 446.4
Cla02g02050 . 8 463 MLO family AT2G17480 50.3 2.7e-124 443.0
Cla01g02044 . 28 386 MLO family AT1G42560 58.7 1.5e-120 429.9
Cla08g00934 . 18 382 MLO family AT1G42560 55.1 7.2e-115 411.0
Cla02g00033 . 10 421 MLO family AT4G24250 50.9 7.2e-113 404.4
Cla01g02044 . 8 387 MLO family AT5G65970 66.8 8.4e-145 510.8
Cla10g00013 . 28 447 MLO family AT5G65970 56.9 1.0e-126 450.7
Cla08g00934 . 24 382 MLO family AT5G65970 53.1 4.1e-107 385.6
Cla02g02050 . 2 381 MLO family AT5G65970 51.8 5.9e-106 381.7
Cla03g00220 . 2 381 MLO family AT5G65970 50.9 2.3e-102 369.8
Cla01g02044 . 20 475 MLO family AT2G33670 59.2 1.0e-148 523.9
Cla10g00013 . 29 530 MLO family AT2G33670 51.8 2.5e-131 466.1
Cla08g00934 . 19 415 MLO family AT2G33670 50.5 2.1e-122 436.4
Cla05g02133 . 64 525 MLO family AT1G11310 64.3 2.4e-169 592.4
Cla03g00220 . 63 506 MLO family AT1G11310 64.9 4.6e-165 578.2
Cla02g02050 . 63 520 MLO family AT1G11310 62.7 7.3e-163 570.9
Cla06g00048 . 5 548 MLO family AT2G44110 54.4 1.1e-158 557.0
Cla06g00048 . 1 555 MLO family AT4G02600 67.0 5.0e-207 717.6
Cla05g01024 CCT 5 591 MLO family AT1G11000 58.6 4.8e-179 624.8
Cla06g00048 . 1 555 MLO family AT4G02600 67.0 5.0e-207 717.6
Cla05g02133 . 64 525 MLO family AT1G11310 64.3 2.4e-169 592.4
Cla03g00220 . 63 506 MLO family AT1G11310 64.9 4.6e-165 578.2
Cla02g02050 . 63 520 MLO family AT1G11310 62.7 7.3e-163 570.9
Cla05g01024 CCT 5 591 MLO family AT1G11000 58.6 4.8e-179 624.8
Cla01g02044 . 20 475 MLO family AT2G33670 59.2 1.0e-148 523.9
Cla10g00013 . 29 530 MLO family AT2G33670 51.8 2.5e-131 466.1
Cla08g00934 . 19 415 MLO family AT2G33670 50.5 2.1e-122 436.4
Cla02g02050 . 1 416 MLO family AT1G61560 65.9 6.2e-160 560.8
Cla03g00220 . 1 416 MLO family AT1G61560 66.3 2.9e-157 552.0
Cla05g02133 . 7 408 MLO family AT1G61560 65.2 9.5e-153 537.0
Cla01g02044 . 28 427 MLO family AT1G61560 50.6 4.9e-109 391.7
Cla01g02044 . 18 495 MLO family AT2G17430 61.1 3.5e-163 572.0
Cla10g00013 . 29 549 MLO family AT2G17430 56.2 4.0e-151 531.9
Cla01g02044 . 7 572 MLO family AT2G17480 61.3 4.9e-187 651.4
Cla10g00013 . 5 633 MLO family AT2G17480 53.6 6.7e-168 587.8
Cla03g00220 . 8 463 MLO family AT2G17480 52.6 2.4e-125 446.4
Cla02g02050 . 8 463 MLO family AT2G17480 50.3 2.7e-124 443.0
Cla01g02044 . 28 386 MLO family AT1G42560 58.7 1.5e-120 429.9
Cla08g00934 . 18 382 MLO family AT1G42560 55.1 7.2e-115 411.0
Cla01g02044 . 8 387 MLO family AT5G65970 66.8 8.4e-145 510.8
Cla10g00013 . 28 447 MLO family AT5G65970 56.9 1.0e-126 450.7
Cla08g00934 . 24 382 MLO family AT5G65970 53.1 4.1e-107 385.6
Cla02g02050 . 2 381 MLO family AT5G65970 51.8 5.9e-106 381.7
Cla03g00220 . 2 381 MLO family AT5G65970 50.9 2.3e-102 369.8
Cla09g01826 . 74 609 MLO family AT5G53760 70.7 2.2e-216 748.8
Cla11g01772 CCT 8 672 MLO family AT5G53760 56.7 4.3e-196 681.4
Cla09g01833 . 44 516 MLO family AT5G53760 56.1 8.8e-149 524.2
Cla03g00220 . 8 536 MLO family AT2G39200 63.8 1.3e-192 669.8
Cla05g02133 . 7 499 MLO family AT2G39200 67.7 8.5e-192 667.2
Cla02g02050 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Cla02g00033 . 10 421 MLO family AT4G24250 50.9 7.2e-113 404.4
Cla09g01826 . 74 609 MLO family AT1G26700 69.5 8.7e-210 726.9
Cla11g01772 CCT 4 653 MLO family AT1G26700 55.6 2.0e-190 662.5
Cla09g01833 . 44 516 MLO family AT1G26700 54.7 6.5e-141 498.0
Cla06g00048 . 5 548 MLO family AT2G44110 54.4 1.1e-158 557.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008207 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00934 Cla_Chr08 FPKM 2.197504 2.516911 2.069392 1.669605 9.865072 9.960239 10.771448 2.314844 2.616697 2.807303