Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00934 ATGAGTAAAGGACAAAAGAAAACATTGAGGGTTTTGATTTCCCTACAAGAAATGGGCGGCGGTGGCGGTAGCAGCGGTGTTGTGCCAAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCTCTGTTTGTGCAATCATCATTCTTATTTCCATTATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTCCAAAAAAGGAAAAAGAAAGCATTGTATGAAGCGCTTGAGAAAGTTAAAGGCGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTCGGACAAAATTATATTGCTAAAGTTTGCATACCCTCAAAATATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGACTCTACCTAAAAGCTCCCACGGCCTCGAGCCTCAAGATCACGACGAAGAGACTACAGATCATCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCGTCTTGGTGGCGGTGCTTCCGTAGCAAGTTGCAAAACAGGGTATACACAACTTATATCTTTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTCCTCCATGTTGTATTTAGCGGCATAACCATGACTCTTGGGAGATTGAAAATTCGTGGGTGGAAGGTTTGGGAAAAACAGACTGAACAAGAACATGACGCCATGAACGATCCTACAAGGTTCAGACTTACTCACGAGACTTCCTTTGTTAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTTTGGAGGCAATTCCTGAGGTCCGTTAGTAGGGCAGATTACTTGTCTCTTAGACATGGTTTTGTCACTGTTCATTTAGCCCCAGGGAGTAAATTTGACTTTCAAAATCCTCTGCTATGGGCATCAATGGTGCTTTTTCTACTTCTCAATGTTAGTGGGTGGCAAGTTATGTTTTGGGTGTCCATATTTCCTCTAGTGGTGATCTTAGCCGTTGGAACGAAGCTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAGGAAAGGCATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCTGATAGACACTTTTGGTTTAGTTGGCCGGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGATGGGATCAACGATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTAAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGGGGAAAGCCCGATTCAACGCCGATGCGAACTTTAGGCGGCAGCGGCGGCGGAGGAGGAGGAAGCCCCCCCGAGTCACCGACGCACTCCCCGCGTGAATTCCAACATCAATTGGTCTCTCAACCGTTGCCAACCGACGTCGAAGCCTCCACCATTCCTTCAGCCAACATAATGACCACCATTGACTTGACTTCACAAATTGTTCGCATATCTTCAACTATAAGGGTGGAAAATGAAGGGACTGATGTGGTGTCTGAAGTACTGTTAACCTTTCCCGAGGAACAAGCAAAACACTTGGCTCATATCCAAGCAACATTGAATGAAGGAAAAGGAAAAACCAAAGGATCTGCTATAAAGTTTCCTGTCGATGTTGTTTATCCCAAGGAAATGCCTCCAGCATTGAAATTTTACTCAGTGTCTCTACCAAAGGGACTAAACAAGGGTGATAGCTTGACTTTTGATGTGTTAGCTGTTTTCACTCATGTTCTGCGTCCATTCCCAGAGACAATCACTCAAGCTGATGTTCAGTTTGTAGTGTTTCTTGACAGTGCATACTTTTTGTCTCCTTATACTGTCAAGGTCCAGTCACTAAGTGTTAAATTGCCCGAAGCAAGAATTGAGTCTTATACAAAATTGGAAAATACGAAGATTCATGGTTCTGAGATCAAATATGGTCCTTATGAGAATCTTCCCCCATATTCATTTACACCCATACGCTTTCATTTTGAAAACAATAAGCCATTTCCTGTTGCTCAAGAGCTTGTCCGTGAGATAGAAATTTCTCACTGGGGCAGCATTCAAATAACAGAGCATTATAATCTTGTTCATGGTGGTGCTCAAAGTAGGGGGGAATTTTCCAGGCTTGATTATCAGGCCAGACCTTATGCAAAAGGTGCTTCAGCATTTAGGAATCTTGTTGCAAAACTACCACCTAGAACTCATTCAGTATACTATAGAGATGAAATTGGAAACATCTCTACATCTCATCTATGGGGTGATTCTAAAAAGACAGAGCTGGAGATTGAACCTAGATATCCAATGTTTGGTGGTTGGAGAACTTCTTTTACTATTGGATACAGTTTGCCACTTCAGGATTTTCTATTTCAGGATCAGGGAAAACGTTTTCTCAACATCTCTTTTGGTTCTCCTATAAATGACGTTGTGATTGATAGGCTTATTGTCAGGGTTGTTTTACCCGAGGGCTCCAGTGATATATCTGTGTATGTTCCATTTTCTCATAAACAGTGGCATGAGACAAAATTTTCACACTTGGACATTGAAGGTAGACCAGTGGTTGTTCTGGAGAAGGAAAATGTTGTGCCAGAGCATAATCAGCATTTCCAGGTCTACTACAAATTCAACAGCATTTCAATGCTTAGGGAGCCTCTGATGTTGATTTTTGGATTCTTTATCCTTTTTGTCTCATGCATCATTTATATGCATTCTGACATGTCAATTTCGAAGTCTTCTGCTTCTTATTTAGCAAAACTACAATGGGATGAGGTGCAAACTGTGATTCAACAAGTTCAGAATGTTATCAACAGATGCTTAACCATACATGATAAACTGGAAGCATCTTTGCGTGATCTTTCTCGAACTGGTGACGTCCAAGCTTGTAAAGCAGTTCGCAAAACAGTTGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGCCTTTGATTTCATTCTTGCAGTCTTCCCAGCAGGCCACCCATATATTGCCCAAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAAGAGAGGTTGGTTGCGAAACACACAACGGTGGTGGACTGCTATGAGAAGAAGCTTGGGGGACGTGAAATTGAGAACAGAGTTGCTTCACAACAGCAAAGAATTACAACATTAAGGCAAGAAGTTGACGATCTTCTCGAGGATGCCCAATGGCCGGATTGA 3159 42.1 MSKGQKKTLRVLISLQEMGGGGGSSGVVPSRELDQTPTWAVASVCAIIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGTLPKSSHGLEPQDHDEETTDHHRRLLWYEHRRRLGGGASVASCKTGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFLRSVSRADYLSLRHGFVTVHLAPGSKFDFQNPLLWASMVLFLLLNVSGWQVMFWVSIFPLVVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPDSTPMRTLGGSGGGGGGSPPESPTHSPREFQHQLVSQPLPTDVEASTIPSANIMTTIDLTSQIVRISSTIRVENEGTDVVSEVLLTFPEEQAKHLAHIQATLNEGKGKTKGSAIKFPVDVVYPKEMPPALKFYSVSLPKGLNKGDSLTFDVLAVFTHVLRPFPETITQADVQFVVFLDSAYFLSPYTVKVQSLSVKLPEARIESYTKLENTKIHGSEIKYGPYENLPPYSFTPIRFHFENNKPFPVAQELVREIEISHWGSIQITEHYNLVHGGAQSRGEFSRLDYQARPYAKGASAFRNLVAKLPPRTHSVYYRDEIGNISTSHLWGDSKKTELEIEPRYPMFGGWRTSFTIGYSLPLQDFLFQDQGKRFLNISFGSPINDVVIDRLIVRVVLPEGSSDISVYVPFSHKQWHETKFSHLDIEGRPVVVLEKENVVPEHNQHFQVYYKFNSISMLREPLMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQVQNVINRCLTIHDKLEASLRDLSRTGDVQACKAVRKTVDASLKELSKELKPLISFLQSSQQATHILPKVEELVAKERDLQERLVAKHTTVVDCYEKKLGGREIENRVASQQQRITTLRQEVDDLLEDAQWPD 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21860892 21879107 - ClCG08G009250.2 Cla08g00934 278589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00934 1052 Pfam Ribophorin I 468 891 IPR007676 GO:0006486|GO:0016021
Cla08g00934 1052 Coils Coil 1020 1047 - -
Cla08g00934 1052 Pfam Mlo family 381 417 IPR004326 GO:0006952|GO:0016021
Cla08g00934 1052 Pfam Mlo family 31 381 IPR004326 GO:0006952|GO:0016021
Cla08g00934 1052 MobiDBLite consensus disorder prediction 402 446 - -
Cla08g00934 1052 PANTHER RIBOPHORIN I 461 1029 IPR007676 GO:0006486|GO:0016021
Cla08g00934 1052 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 461 1029 - -
Cla08g00934 1052 MobiDBLite consensus disorder prediction 402 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02147 Cla-Chr5:33085518 Cla08g00934 Cla-Chr8:21860892 2.05E-168 dispersed
Cla08g00934 Cla-Chr8:21860892 Cla10g00013 Cla-Chr10:235056 7.38E-143 dispersed
Cla08g00934 Cla-Chr8:21860892 Cla01g02044 Cla-Chr1:34955812 4.76E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00934 K12666 - csv:101217990 1076.23