Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00935 ATGCTTGTTCATCGTTGCAAAGGAAATGACCCCATAAAATCTATATATCATAGATCAGATGGGGACCCGACCCAGGAAGGGAGTAAGGATGAGGCGGAATCCAACGGATGGAATTCCAGTAGCAGACTCTCACCAAACCCGAAATTCCTCCATTCTTACACCTTCATTTCTTTGCATTTCTCACCTTTCCCTTTCATTAGCTTCCTGGATTCCTCTTCCCCTAATTCACTGAATGTTGTGGATCTGGAGTGTGCTTTCGCTCTTTTTATCTTCTCCGGTATTAGAATCTCTGAAATGATTGACTGGCTGTCGGCTTTGAGCATGTCAAAACGGCTCATGAGAAGCATGAGTCAGAAATTGAGGAGGAAGAATAACAAAAGTGTTGCTGAGGAAGAGGACATTTCAAGGGGAATATCTTTGAGATGTCTTACCTTATATGGTAGAGGTGGAGGTTGCAAAGTGGGTGCTGACACTGGTGAGGAAATTGGTGACCCAGGTAGTAGAAGAAGGTCCAGTGCTAGTGAGGAAGGTAAGGGATACAAATCATTATTTGGTACTGAAGAAAATAGTGTGGATTGCTTCTCATATGGTGTAAAGGAAAGATTTCGTAAGAAACAAAGCCCAAAGCATTCTGAACTTCGGGACTCTACAAGGAACAGTGACGTTCATATTTTTCTTCCTGATGACATTCTGGAAATGTGCTTGATGAGGCTTCCCATTACGAGTCTTATGAATGCTCGCCTTGTATGCAAAAAGTGGAGATATCTAACTAGCACTCGTCGGTTTTTACAAATGAGACGGGAATGTTTATATCAGACTCCATGGATATTTTTATTTGGTGCAGTTAAAGAGGGCTATTGCTCCGGCGAGATACATGCACTGGATGTATCTCTAAAGCAATGGCATAGAATAGATGCTGATATTCTCAAGGGAAGATTTATGTTCTCTATAGCCAGTATCCATGATGACATATATATCATTGGTGGATGTTCTAGCTTGACCAACTTTGGGAAAGTAGATAAGAGCTCCTTCAGGACACATAAAGGGGTCTTAGTGTTTAGTCCTTTAACTAAATCTTGGCGCAAAATTGCGTCTATGAAGTATGCCAGATCAATGCCTATATTGGGAACTTCTGAGGTCAATACAGAGTTTTCAGTAGTTCAGAGCCATCATAATCGGCAAGATAGACGTTATTTGAGATCACGTGCCGGTGGTTCATTGGATGTTTATGAGGATCCTCACAGGCTCTCGCTAAGACGTCAAGTCAGAAATCCTGTGGAAGACAACGACATTTCAATGTTGTCTAATAGGAAGTCATACAAGTTCATTCGACAAAAGAGTGATCAGTCTCGTGCAAAAGGACACCGTAGGTTTGTGATTATTGCTATAGGGGGTCTAGGATCTTGGGATGAGCCAATTGATTCAGGAGAGATTTATGATTCCTTATCAAATAAATGGACAGAAATTCAGAGGCTCCCGGTAGATTTCGGTATTATATGTTCTGGAGTTGTCTGCAATGGGATCTTCTATGTTTATTCTGAGACAGACAGACTTGCAGGTTATGACATCGAAAGAGGCTTTTGGATTGGAATCCAAACATCTCCATTCCCGCCGCGTGTTCATGAGTACTACCCCAAACTCGTATCCTCTAATGGTCGGCTATTCATGCTTTCTGTCTCCTGGTGTGAAGGGGATGGTCAAATAGGGCAGAGAAACAAGGCTGTGAGGAAACTGTGGGAGTTAGATCTCACATACCTTGCCTGGACGGAGGTATCTGTGCATCCCGATGCACCAATGGACTGGAATGCTGCATTTGTACTCGACTTTTTGACAGTGTGTGACATCTCCAACGCAGTATCAGACTGGAATCACATTTCTAGAACTCGTATATGTGGTGCAATCCAAAGAATTTATAATGACTTTGACGAGCTGACTATGGAAGGCATCATGAATCCAACTTCTTTAAGAATATGTATAAATGTGCAACCGAAGCCACAAATAATTGGACAAGAGCACATGCAGAAACAAAGTTATCCCATATTACTAGGATTAGGGAATATATTGGAGAAGTTGGGTAACTTATCAACATGTCTTAAGGCACGCTCAGCAATTTGCCTGGTTTTGTTGTCACCATGCTGGAAGGCATCAACAAGCGCTGTACTTACCTTTGGATTATTCGAGAATTCCATTGCGATGTTGTCCGTGCGCAACAGCCTCTCGACTGTCCAAACGGCCTTTCTCATTAGATTCTCTGTACGGGCTACCAATTTGTCCACTGCCTTGCCTTCCAAAAGACAAAAACTTTCCCTCAAAGAACACGTACCCCGGTGGAGAGGACACAGCCCTGTCAGCACTGGTTGTGCGCTGAGACATGGAAAAATTGAGGCACAAAATCCAGGTTCCGGAAGCACCAACTCAAAAGCTCCTTCATCAAGCATCTGCCTGGAGAGGCCTAAATCCATTTCAGGGAGATCAGCTAGAAGCCCCACAGCAGCTGCTTGTTCTTCTGTGATTCCAGTATTTTCTGCTATGATTCTAAATAAACTGCTCAGCTGGCCAACCGAACCACGTAGAGCATCTGCTAGCTCCTGGCTTAAGTGTGGGGAGATGTTCTGGAGGAGCTTTATAGCAGAAACACGCAAGAGAACTTGTAAGTCCAACAAGAACCTGGAGAAGCTTGCATTCGATGGCTGGACCGGTTCCACTGGAATGGAATTGAAATCACAGCCTGAGCTCACAACATTGGCAAGAATTGTTGCAGATACTTCTTTTAGTTTCATGGGAAGTACATTCGAACCAACAGTGAAAAGATCCTTAACGAGAGACTTCCAGAATGTCTTCCACAGCGATCACGAGTTAAAAGGTGAAGAAGGAGAAAATCAATTAGTGGCAATTTGTAGCTCGCCTCCTATTCTCGATCAGAATACAAACCGAGTTGATGTTGAGAGTGAAACAGAGCTTGGGCCACTTATCTCTTCTTAG 2982 43.26 MLVHRCKGNDPIKSIYHRSDGDPTQEGSKDEAESNGWNSSSRLSPNPKFLHSYTFISLHFSPFPFISFLDSSSPNSLNVVDLECAFALFIFSGIRISEMIDWLSALSMSKRLMRSMSQKLRRKNNKSVAEEEDISRGISLRCLTLYGRGGGCKVGADTGEEIGDPGSRRRSSASEEGKGYKSLFGTEENSVDCFSYGVKERFRKKQSPKHSELRDSTRNSDVHIFLPDDILEMCLMRLPITSLMNARLVCKKWRYLTSTRRFLQMRRECLYQTPWIFLFGAVKEGYCSGEIHALDVSLKQWHRIDADILKGRFMFSIASIHDDIYIIGGCSSLTNFGKVDKSSFRTHKGVLVFSPLTKSWRKIASMKYARSMPILGTSEVNTEFSVVQSHHNRQDRRYLRSRAGGSLDVYEDPHRLSLRRQVRNPVEDNDISMLSNRKSYKFIRQKSDQSRAKGHRRFVIIAIGGLGSWDEPIDSGEIYDSLSNKWTEIQRLPVDFGIICSGVVCNGIFYVYSETDRLAGYDIERGFWIGIQTSPFPPRVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGQRNKAVRKLWELDLTYLAWTEVSVHPDAPMDWNAAFVLDFLTVCDISNAVSDWNHISRTRICGAIQRIYNDFDELTMEGIMNPTSLRICINVQPKPQIIGQEHMQKQSYPILLGLGNILEKLGNLSTCLKARSAICLVLLSPCWKASTSAVLTFGLFENSIAMLSVRNSLSTVQTAFLIRFSVRATNLSTALPSKRQKLSLKEHVPRWRGHSPVSTGCALRHGKIEAQNPGSGSTNSKAPSSSICLERPKSISGRSARSPTAAACSSVIPVFSAMILNKLLSWPTEPRRASASSWLKCGEMFWRSFIAETRKRTCKSNKNLEKLAFDGWTGSTGMELKSQPELTTLARIVADTSFSFMGSTFEPTVKRSLTRDFQNVFHSDHELKGEEGENQLVAICSSPPILDQNTNRVDVESETELGPLISS 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21880101 21891905 + ClCG08G009270.2 Cla08g00935 278590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00935 993 PANTHER OS09G0555300 PROTEIN 102 630 - -
Cla08g00935 993 SMART kelc_smart 459 506 IPR006652 GO:0005515
Cla08g00935 993 SMART kelc_smart 323 380 IPR006652 GO:0005515
Cla08g00935 993 MobiDBLite consensus disorder prediction 157 176 - -
Cla08g00935 993 MobiDBLite consensus disorder prediction 1 42 - -
Cla08g00935 993 Gene3D - 225 261 - -
Cla08g00935 993 SMART fbox_2 226 266 IPR001810 GO:0005515
Cla08g00935 993 Pfam F-box domain 226 262 IPR001810 GO:0005515
Cla08g00935 993 SUPERFAMILY Kelch motif 274 605 IPR015915 GO:0005515
Cla08g00935 993 Pfam Kelch motif 312 366 IPR006652 GO:0005515
Cla08g00935 993 ProSiteProfiles F-box domain profile. 220 266 IPR001810 GO:0005515
Cla08g00935 993 MobiDBLite consensus disorder prediction 797 813 - -
Cla08g00935 993 Gene3D - 449 630 IPR015915 GO:0005515
Cla08g00935 993 Gene3D - 262 401 IPR015915 GO:0005515
Cla08g00935 993 MobiDBLite consensus disorder prediction 162 176 - -
Cla08g00935 993 MobiDBLite consensus disorder prediction 794 813 - -
Cla08g00935 993 PANTHER OS09G0555300 PROTEIN 102 630 - -
Cla08g00935 993 MobiDBLite consensus disorder prediction 1 29 - -
Cla08g00935 993 SUPERFAMILY F-box domain 225 288 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00935 - - - csv:101217599 1027.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00935 Cla-Chr8:21880101 Cla03g00637 Cla-Chr3:7608108 4.33E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g74 . . . . . . . . Cmo05g00989 Cmo12g00622 . . . Car12g00663 . . Cpe07g00596 Bhi04g01221 . . . . . . Cla08g00935 Cam08g1382 Cec08g0963 Cco08g1082 Clacu08g1089 . Cre08g0872 . . Cone17ag1463 Cone20ag0013 . . . Cme03g01334 . Blo18g00741 . Bda01g01565 Bpe02g01759 . Bma01g00698 . . . . Cma12g00686 Cma05g00969 Car05g00853 . Cpe11g00781 . . . . . . . . . . . . . . . Lsi08g00777 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007825 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00935 Cla_Chr08 FPKM 3.518839 3.410277 6.291322 7.09719 2.752794 3.388915 2.204101 10.476289 10.064056 10.902318