Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00936 ATGTTGATGATAGAGCTGGAACTCGTCGCAACACAGCCAAGAGAGCTCGGGTCTGGAAATGGTGGGGTCTCTCTTCCATTTCTCGTCAAGTTTCTCTATTGCGGCTTGCTGCTTCTCTCTCTTACGGAATCGCCAGCCTTTTTGAAAATTTTAATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGCAGGGAAAGTAGAAGGAGACCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACAGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCTCTCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTTTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCGAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCGAATGTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCCATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGCATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAAGCCCCACAGGTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTGCATTTTGTCGCATGCATAATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATCTCCAGATGGTTTCAGCCATGGCATTGGGAAACTTATCTCTAGAGTCCAAAAATTTGACTCAGTTGCCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACGTGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAAGGCAAGGCAGTGGACAAATTGGTAGCCCTTTTAGATCACACGAGTGAGAAGGTCGTTGAGGCAGCACTTGCGGCACTATCTACTTTATTGGACGATGGGGTCGATGTTGAGAAGGGGGTGGACATTTTGCACAGTGTAGGAGGGGTTCAGCCTATATTTGATGTGTTGCTTGAAAACCGTACAGAGAATCTAATGAGAAAGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGACAACATCGCAATGGAATTCTCGAATAATCCAAAGGTAAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACAACAAAACCAGGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTCCCTAATCCTAGTAATATGGGATAA 2673 44.48 MLMIELELVATQPRELGSGNGGVSLPFLVKFLYCGLLLLSLTESPAFLKILMCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGSPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNVLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIRSSGAIISLVQFIEAPQVDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALAFCRMHNLAALFIELLQSNGLDNLQMVSAMALGNLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVDILHSVGGVQPIFDVLLENRTENLMRKAVWTVERLLRTDNIAMEFSNNPKVSTALVDAFQHGDNKTRQIAERALRHVDKLPNFSNIFPNPSNMG 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21887805 21906282 - ClCG08G009290.2 Cla08g00936 278591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00936 890 Pfam U-box domain 105 179 IPR003613 GO:0004842|GO:0016567
Cla08g00936 890 SUPERFAMILY ARM repeat 453 708 IPR016024 -
Cla08g00936 890 SUPERFAMILY ARM repeat 219 830 IPR016024 -
Cla08g00936 890 Gene3D - 197 388 IPR011989 -
Cla08g00936 890 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 74 885 - -
Cla08g00936 890 Coils Coil 326 346 - -
Cla08g00936 890 SMART arm_5 339 379 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 380 419 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 746 787 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 254 294 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 420 465 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 212 252 IPR000225 GO:0005515
Cla08g00936 890 SMART arm_5 521 561 IPR000225 GO:0005515
Cla08g00936 890 Gene3D - 651 881 IPR011989 -
Cla08g00936 890 Gene3D - 389 561 IPR011989 -
Cla08g00936 890 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 74 885 - -
Cla08g00936 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 189 IPR013083 -
Cla08g00936 890 ProSiteProfiles U-box domain profile. 102 181 IPR003613 GO:0004842|GO:0016567
Cla08g00936 890 CDD RING-Ubox_PUB 107 152 IPR045210 -
Cla08g00936 890 SMART Ubox_2 106 174 IPR003613 GO:0004842|GO:0016567
Cla08g00936 890 SUPERFAMILY RING/U-box 91 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02119 Cla-Chr5:32786870 Cla08g00936 Cla-Chr8:21887805 7.93E-30 dispersed
Cla05g02371 Cla-Chr5:35272179 Cla08g00936 Cla-Chr8:21887805 3.72E-125 dispersed
Cla08g00936 Cla-Chr8:21887805 Cla07g00605 Cla-Chr7:11031387 3.89E-20 dispersed
Cla08g00936 Cla-Chr8:21887805 Cla03g00152 Cla-Chr3:1576062 5.97E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00936 - - csv:101217370 1450.65