Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00940 ATGAGTTTGTTGTTTTTTCCATTGCAAATCATTCCTCTGTTTCTCTCTATTTTGGACGCCGCGTTCCTCGCTGCAGGTTTTCTTCTCTTATTCTCTCCGATTTGGAGGGGGAAGGAGGAGAAGACGGTCTTCTCCTTCTGCTTCTGTGAATCGAATGATTGGGGTGGTTCTGTTCTATTAAGAAATTGGCGATTTCGGTTGCGGTTCTTTGTTGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGATGGGAAAAGAAGGTAAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTTGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTCACTCGAGTATTTGGCCTCTCAAAGTCATTTACAAGAACTACGCAATGGTAGGATTCACAATTCATCACAATCATCACCCTCACAACAGAATGACACCCATGCCCAGGAATCAGATCCCTGAAGTTGCTGAACTTCTGTTTGGAGGTTGCTGTATAGAAGTTGCTGAAAAAGCTATCCAAGTTCTCGACGTCTCGGTTCAGCTTGATGACCATGAGAGGTACTTGGGATGTTCCAAGGAAAGCTCCCAAAAGTTTGGTTACCAAGATCTGCCTTTGGGAGGGTTAGAGATGTATAAATTAACAATCCAACAACCCAACCATATCAAACCCTACAATTTGGGAAAGTCAAGCAGGAAGATGATTTTAACCCCAAAGCACATCTCCTTTGAAACACACACACACAGAGTCTCCATGGGCAACCTGTGCGGCACTCCTGGCGACACCAACACCCCTCCAGGCCCTCCTCCTACTAAACCTTCCTCTCCAGGGCGTTCCACCACGACGCCACAGAATCTTAAAGTTTACACTCTAACGGAACTGAAGAAGGCCACCAAGAATTTCCGGGCCGACGGGATGGTGGGGGAAGGTGGATTTGGAAGGGTGTTCAAAGGGTGGGTGGATGAGGTGACTTACCAGCCCTCCAAGGTCGGCGTCGGAATCCCCGTGGCCGTTAAAATCTCAGAACTCCACAGCTTGAACCATCCACACCGGTGGAAGGATGAAATGGAATTTTTGGGGAAATTCAGCCATCCAAATGTGGTGAAATTGATCGGCTATTGTTGTGAACAAAAACAATTTCTTCTTGTTTATGAGTTCATGCAGAAGGCACGTAGTTTGACATTTCTCCACACGTCAAAGAATGTAATTTACCGCAATATCAAGACATCGAGTATTCTGTTGGACGGGAATTTGAACCCAAAGTTATCAGATTTTGGGCTTGTTGTGACAATGGGCCCATCCAATGGTAACACCCACGTCAGCACAGATGTATATGGCAGCTATGGCTACCTTGCCCCTGAGTACATTGCAACTGGACATTTGTACACAAAAAGTGACGTGTATGGGTTCGGCATGGTTCTCCTAGAGCTCCTGACCGGATTACGAGCAGTGGACCGAAACCGGCCCCGTGAGTCTCAGAACTTGGTGAGGTGGGCCCAGCCATCATTGAGCAGCAAGAAGAAGATAAAGAAACTAATAGACCCAAGGCTTGGGGACGACTACTCGCCCAAAGGAGCCTGGGCCACAGTCGAACTCATACTAAAATGTTTGCAATCAGAACCCGGAAAGCGGCCCTACATGGAAGAGGGAGATGAAAACATTTGGTTCTGA 2478 46.17 MSLLFFPLQIIPLFLSILDAAFLAAGFLLLFSPIWRGKEEKTVFSFCFCESNDWGGSVLLRNWRFRLRFFVDGSRVESDSRVRFESRHSVNSSGTWMGKEGKSNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIHSSIWPLKVIYKNYAMVGFTIHHNHHPHNRMTPMPRNQIPEVAELLFGGCCIEVAEKAIQVLDVSVQLDDHERYLGCSKESSQKFGYQDLPLGGLEMYKLTIQQPNHIKPYNLGKSSRKMILTPKHISFETHTHRVSMGNLCGTPGDTNTPPGPPPTKPSSPGRSTTTPQNLKVYTLTELKKATKNFRADGMVGEGGFGRVFKGWVDEVTYQPSKVGVGIPVAVKISELHSLNHPHRWKDEMEFLGKFSHPNVVKLIGYCCEQKQFLLVYEFMQKARSLTFLHTSKNVIYRNIKTSSILLDGNLNPKLSDFGLVVTMGPSNGNTHVSTDVYGSYGYLAPEYIATGHLYTKSDVYGFGMVLLELLTGLRAVDRNRPRESQNLVRWAQPSLSSKKKIKKLIDPRLGDDYSPKGAWATVELILKCLQSEPGKRPYMEEGDENIWF 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21956257 21964984 + ClCG08G009340.2 Cla08g00940 278595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00940 825 ProSitePatterns Protein kinases ATP-binding region signature. 136 158 IPR017441 GO:0005524
Cla08g00940 825 ProSitePatterns Protein kinases ATP-binding region signature. 576 608 IPR017441 GO:0005524
Cla08g00940 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Cla08g00940 825 SUPERFAMILY Protein kinase-like (PK-like) 543 818 IPR011009 -
Cla08g00940 825 CDD STKc_IRAK 136 383 - -
Cla08g00940 825 Pfam Protein kinase domain 659 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00940 825 Pfam Protein tyrosine and serine/threonine kinase 134 386 IPR001245 GO:0004672|GO:0006468
Cla08g00940 825 MobiDBLite consensus disorder prediction 521 554 - -
Cla08g00940 825 SUPERFAMILY Protein kinase-like (PK-like) 109 388 IPR011009 -
Cla08g00940 825 Gene3D Transferase(Phosphotransferase) domain 1 206 398 - -
Cla08g00940 825 Gene3D Transferase(Phosphotransferase) domain 1 653 823 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 547 657 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 659 817 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 98 387 - -
Cla08g00940 825 Gene3D Phosphorylase Kinase; domain 1 548 652 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 547 657 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 659 817 - -
Cla08g00940 825 PANTHER OS07G0668900 PROTEIN 98 387 - -
Cla08g00940 825 Gene3D Phosphorylase Kinase; domain 1 102 205 - -
Cla08g00940 825 MobiDBLite consensus disorder prediction 531 545 - -
Cla08g00940 825 SMART serkin_6 570 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00940 825 SMART serkin_6 130 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00940 825 ProSiteProfiles Protein kinase domain profile. 570 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00940 825 ProSiteProfiles Protein kinase domain profile. 130 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g00940 Cla11g01825 CCT
Cla08g00940 Cla11g01825 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00940 Cla-Chr8:21956257 Cla11g01825 Cla-Chr11:31921672 5.22E-55 dispersed
Cla08g00940 Cla-Chr8:21956257 Cla08g00941 Cla-Chr8:21979379 2.88E-72 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80743 PF07714 PK_Tyr_Ser-Thr 7.70E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00940 - - csv:101217131 585.874