Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00941 ATGGGCAATCTCTGCGCCACTCCTGTGGATACTCACACCCCTCCTCCAACTATACCTTCCTCCCCAGTGACTTCCACCCCCACGCCCCAGAATCTCAAGGTTTACAGCCTGACGGAGCTGAAGACGGCCACCAGGAATTTCCGGCCGGATACTTTGCTGGGGGTGGGCGGATTTGGAAGGGTGTTCAAAGGATGGGTGGACCACCTCACTTACGCCCCCTCCAAGCTCGGCGTCGGAATTCCTGTCGCCGTTAAAAAGTCAAACCCAGACAGCTCTCAGGGTCTACGCGAATGGAAGGCTGAAGTGGAGTTTTTGGGGAAATTCAGCCATCCAAATGTAGTGAAATTGATCGGCTATTGTTGGGAAGAAAAGCAATTTCTTCTCGTTTATGAGTACATGCAAAGGGGTAGTTTGGAAAACCACTTGTTTCGAAAAGGCGTAGAACCCCTATCATGGGAAACACGAATTAAGATAGCTACAGGAGCAGCATGTGGTTTGACGTTTCTTCACACGTCGGAGAAGAGTGTGATTTACCGTGATTTCAAAGCTTCGAATATTCTTCTGGATGGGAATTTTAACCCAAAGTTGTCAGATTTTGGGCTTGCGAAACTGGGCCCAGCCAATGGTAACTCCCATGTCAGCACAAATCCAGTTGGCACCTACGGCTATGCTGCCCCTGAGTACATTGCAACTGGACATTTGTATATAAAAAGTGACGTGTACGGATTTGGCGTGGTTCTCCTAGAGCTTCTGACCGGACTACGGGCAGTGGACCCAAACCGGCCGAGTGGGTCACACAACTTAGTGGGGTGGGCCGAGCCATCACTGAGCAGCAAGAAGAAGATAAAGAAACTAATAGACCCAAGGCTCGGGGACGACTACTCGCCCAAAGGAGCCTGGGCCATAGCCGAACTCATATTAAAATGTTTGGAATCCGACCCCAGAAAGCGGCCCTCCATGGAAGAGGTTTTGGTGATTCTAGAAAAAGTCAGTTCTCTTAAAGACAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCAGCCGTTATTGA 1053 50.33 MGNLCATPVDTHTPPPTIPSSPVTSTPTPQNLKVYSLTELKTATRNFRPDTLLGVGGFGRVFKGWVDHLTYAPSKLGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFSHPNVVKLIGYCWEEKQFLLVYEYMQRGSLENHLFRKGVEPLSWETRIKIATGAACGLTFLHTSEKSVIYRDFKASNILLDGNFNPKLSDFGLAKLGPANGNSHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSGSHNLVGWAEPSLSSKKKIKKLIDPRLGDDYSPKGAWAIAELILKCLESDPRKRPSMEEVLVILEKVSSLKDRPKEPKSRARTPSRY 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21979379 21982200 + ClCG08G009350.1 Cla08g00941 278596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00941 350 ProSitePatterns Protein kinases ATP-binding region signature. 53 86 IPR017441 GO:0005524
Cla08g00941 350 Pfam Protein tyrosine and serine/threonine kinase 51 324 IPR001245 GO:0004672|GO:0006468
Cla08g00941 350 Gene3D Phosphorylase Kinase; domain 1 31 132 - -
Cla08g00941 350 MobiDBLite consensus disorder prediction 1 27 - -
Cla08g00941 350 PANTHER OS01G0588500 PROTEIN-RELATED 28 344 - -
Cla08g00941 350 ProSiteProfiles Protein kinase domain profile. 47 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00941 350 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 28 344 - -
Cla08g00941 350 SUPERFAMILY Protein kinase-like (PK-like) 22 328 IPR011009 -
Cla08g00941 350 Gene3D Transferase(Phosphotransferase) domain 1 133 346 - -
Cla08g00941 350 CDD STKc_IRAK 53 329 - -
Cla08g00941 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00941 - - - csv:101216893 649.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00941 Cla-Chr8:21979379 Cla10g00023 Cla-Chr10:332732 4.76E-143 dispersed
Cla08g00940 Cla-Chr8:21956257 Cla08g00941 Cla-Chr8:21979379 2.88E-72 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80744 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00941 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0