Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00962 ATGGGCTGTGCCTCCTCCAAGCTCGACAACCTTCCGGCGGTGGCTCTCTGCCGTGACCGTTGCAAATTTCTTGACCAAGCTCTCCTTTTTACCCATTCTCTCATCGATTCCCACTATGCCTATGCTGATTCACTCAACAAAATCGCCTCCGCTCTCCGCCGTTTGTTTGACCAAGACGGTGAAAGCGGCGGCGGCGATTTGAAATGTCCTCCACCGCCGCCTGACGCCCCTAAAATGGAGAGATCTGATTCTGATTCTAATTCCGACTCCGATTCCGATTCTGATTCCGACGAAGAAGAAGAAGAACATGGGTGTTTTAATCAAGAGAAACCACAATCTCCCCCGGTTGGAAGCTTCATGTTCTCGAACTACGATTCAGCAAGAGGACAGCCACCACCGCCGCCGCCGACCGGCTCATCGTGGGATTTCTTCAATTTCTTCGAAACCTACGAGAGATACGAACAACCCATTTTCTATTGGGACCGTGAAGGAGCAGATCAGAAGTTACAAACAACAAAAGTTGTGGCGAAGAAGAAGAAGAAGAAGAAACCGGTGGTGGTTGTTGATTCGAAGAAAAATGAGGAAGCTGAAAAATCAAACCAACCGGAAAAGAAGATTGACGATCCAAAGATGGGTGTGTTAGATTTGATGAGAGAAATCAAGGGCTCCTTTGAAAAAGCTTCTGAATCGAGCAATTCCATTTCCAAGCTCCTTTCTTATGGTCAAAGAATGAGTTTTTGCAAAGATACAAGAACAGGCTCACGAGGTTTATTGTCTACTTTGAAGAAGCTGTGTGTTTGGGAGCAGAAACTGTACTTGGAAGTGAAGGCTGAGGAGAGATTGCGTATGATTTTGGAGAAGAAATGCCGGCAGCTGAAGAATTTGGTGGAGAAGAAGGCTGATGCTCGGAAAATTGATCCCCTTCGACATTCCATCAGAAATTTGTCGATCAAATTGAAAGTTTCAATTCAGGTTGTTGATAGGATTTCGATTACAATAAGCAAATTGAGGGATGAAGATTTTTTAGCAGAGATGAATGAACTGATTCATGGATTACTGAGCATGTGGAAAGCCATGTTAGAATATCACAAGCAACAAACCCAAGCACTAACGGACTGCAAACCCTTCGAATCAATCCTCAACGGCGCCCTCGACGACGCTCATCTGGAAGCCGCCATGGATCTAAAGCTCGAGCTCGAGAATTGGAGATCAAATTTCATTGAATTAATCGCCACCCAAAAGGACTGCATCAAAGCCCTCAACGGTTGGCTTCTCCGATGTCTATTATACGAACCCGAGCCTGAAGAAACCCCCAACGGTGGCTGCCCCCCGCCGTTCTCTCCAGCAAGAATCGGGGCTCCTCCCGTGTTTGTAATCGGCCACCTCTGGTCCGACACGGCCGAAAAATTCTCCGACAAGGACGTCTCTGAGGCCATACAGGGGCTGGTCTTGAAGTTGGATCAGGCGCTGGAACAGCAGAGTTGGGATTTGCAGAGATTGGCGATGGCGAATAGAGATTTGGAGAAGAAGATTAAGGTGAAGAAGACGACGGCGACGAATCAAGGTTTTGAGGAGAAGACAATGGCGGTGGCGGCGGGGACTGTGCATAAAGTGGGTAAGTTCAGTGGGTGTGAGATTCAATTGGGGCTGAAGCAGATTTTTGTGGGGTTGACGAGGTTTTGTGGGGACTCCATTACAGCTTACGAGGAGCTCTGTTCAGCCATAACCGAAGAGAAACAAGAACAGACTCAGAGCCAGCCAGGTCCTCCATAG 1773 47.72 MGCASSKLDNLPAVALCRDRCKFLDQALLFTHSLIDSHYAYADSLNKIASALRRLFDQDGESGGGDLKCPPPPPDAPKMERSDSDSNSDSDSDSDSDEEEEEHGCFNQEKPQSPPVGSFMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPIFYWDREGADQKLQTTKVVAKKKKKKKPVVVVDSKKNEEAEKSNQPEKKIDDPKMGVLDLMREIKGSFEKASESSNSISKLLSYGQRMSFCKDTRTGSRGLLSTLKKLCVWEQKLYLEVKAEERLRMILEKKCRQLKNLVEKKADARKIDPLRHSIRNLSIKLKVSIQVVDRISITISKLRDEDFLAEMNELIHGLLSMWKAMLEYHKQQTQALTDCKPFESILNGALDDAHLEAAMDLKLELENWRSNFIELIATQKDCIKALNGWLLRCLLYEPEPEETPNGGCPPPFSPARIGAPPVFVIGHLWSDTAEKFSDKDVSEAIQGLVLKLDQALEQQSWDLQRLAMANRDLEKKIKVKKTTATNQGFEEKTMAVAAGTVHKVGKFSGCEIQLGLKQIFVGLTRFCGDSITAYEELCSAITEEKQEQTQSQPGPP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22205556 22207596 + ClCG08G009570.1 Cla08g00962 278617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00962 590 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Cla08g00962 590 MobiDBLite consensus disorder prediction 111 125 - -
Cla08g00962 590 PANTHER F5M15.15 1 248 - -
Cla08g00962 590 PANTHER F5M15.15 247 583 - -
Cla08g00962 590 Pfam Protein of unknown function (DUF632) 249 485 IPR006867 -
Cla08g00962 590 Coils Coil 490 510 - -
Cla08g00962 590 Coils Coil 275 305 - -
Cla08g00962 590 PANTHER UNCHARACTERIZED 1 248 - -
Cla08g00962 590 PANTHER UNCHARACTERIZED 247 583 - -
Cla08g00962 590 MobiDBLite consensus disorder prediction 189 208 - -
Cla08g00962 590 MobiDBLite consensus disorder prediction 59 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00962 - - - csv:101213768 959.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00962 Cla-Chr8:22205556 Cla11g01541 Cla-Chr11:29081073 1.88E-58 dispersed
Cla08g00956 Cla-Chr8:22120321 Cla08g00962 Cla-Chr8:22205556 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00962 Cla_Chr08 FPKM 25.675117 26.713385 24.809109 25.910511 27.200432 24.233049 28.73287 38.573296 36.159229 37.000751