Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00972 ATGGAACTCAATCAGCTTAACCAAGATCCAATTTCCGGTGCTTTCATCCGTGGCCTTGTTAAACATTTGAAACCCAAGGAACCAATCAATCCTAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGACATCAATCCTTCTAAAATGGCGGAACAAATTCCCAAACCTCAACCAACACAAACCCACAAGAAGCAAGTTCGAAGAAGGCTCCATACCAGTCGACCTTATCAAGAACGCTTGTTGAATATGGCGGAAGCCAGAAGGGAGATTGTCACTGCGCTTAAGTATCACCGGGCCGCTATGAAAAAGGCCGCCGCCACCGCTGCCACCGGTACCACCGCTGAGCAGCAACGGCAACCGCAGACGCCGCTGGAGTTATCCCCTGCCAGATCCCAAGAAGGGAAGATCAGACACAGGAAAATCCCCAAATCTACAGAGAGGAATAGAATTTATGAAACCCAGAGTGATTTCAAGTATAGTGAAAATTATAACAACAACAACAATAATAATTTGAAGAATTTTTGTTATGATCCATCGATGATGATGATGAATTGTTCATTCCCGAGTTGGTCGATGAATTCGCAAACGGTGGAAGGGAACAATATTGTGGACATTGTATTACCAGAACAAACTCTAGGGCTGAATCTCAACTTGCAGGATTTCAACAATTTGGAAACAAATCTGTTCTCAAACGGCGGGGTTTCGGGTTCGGGATCGTCGTCGACGTCGACATCATCTCCAAGCCTTTCGATTGCGACGGATCAGGAAGTTCGGAATTGTGGAAGAGAGTCGAATACGAGGGGAGGCGGAGGACTGCACGTGACGGTGGGGGAGGAGGAGATGGCGGAGATGAGATCGATAGGGGAGAAACATGAGATGGAATGGAGTGATAAGATGAATTTGGTGAAATCGGCGTGGTGGTTGAGGTTTATGAAGATGGGAAAAAAGGAAGAGGAAGAAGAAGAAGAAGGGTTTGGGGATCCGTTCCATCAGATTTTGGAATTTCCAGATTGGATGAACAATGGAAACGAGAGTTGTTTTCAAGAACAATTGTTGAATGATTACCAGTTCTTCCATCATGATCATCCTTCTGCTCTTCCTTGCATGGACATTGGAGAGTTTGAAGGCATGGATGGGGAGTGGTTAGCTTGA 1164 45.27 MELNQLNQDPISGAFIRGLVKHLKPKEPINPNSSSSSSSSSSSSSSDINPSKMAEQIPKPQPTQTHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKYHRAAMKKAAATAATGTTAEQQRQPQTPLELSPARSQEGKIRHRKIPKSTERNRIYETQSDFKYSENYNNNNNNNLKNFCYDPSMMMMNCSFPSWSMNSQTVEGNNIVDIVLPEQTLGLNLNLQDFNNLETNLFSNGGVSGSGSSSTSTSSPSLSIATDQEVRNCGRESNTRGGGGLHVTVGEEEMAEMRSIGEKHEMEWSDKMNLVKSAWWLRFMKMGKKEEEEEEEGFGDPFHQILEFPDWMNNGNESCFQEQLLNDYQFFHHDHPSALPCMDIGEFEGMDGEWLA 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22376020 22378438 + ClCG08G009670.2 Cla08g00972 278627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00972 387 MobiDBLite consensus disorder prediction 22 85 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 113 132 - -
Cla08g00972 387 PANTHER E1A-BINDING PROTEIN P400-LIKE 3 387 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 111 152 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 237 263 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 135 152 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 237 276 - -
Cla08g00972 387 PANTHER E1A-BINDING PROTEIN P400-LIKE 3 387 - -
Cla08g00972 387 MobiDBLite consensus disorder prediction 28 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00972 - - - csv:105435851 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01647 Cla-Chr5:27951377 Cla08g00972 Cla-Chr8:22376020 1.92E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g188 . . . . Bpe02g01570 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1712 Cone7ag1630 . . . . . . . . Bda01g01355 . Bpe14g00291 . . Bma02g00329 . . . . . . Car05g00884 . . . . . . . . . Cla08g00972 Cam08g1421 Cec08g1000 Cco08g1123 Clacu08g1125 . Cre08g0909 Lsi08g00820 . Chy03g00643 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007807 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00972 Cla_Chr08 FPKM 6.661911 7.426907 30.908161 29.880087 11.293111 10.645401 10.667319 25.879942 25.142084 28.584675