Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00973 ATGGCTGCTGCAGCTGCAAACACCGGCGAGCAAAGCCACCGCCGCCGATCAGTGTCCAAAGTGGGCATAATTGGGGCCGGCATTAGCGGAATCGCTGCCGCTAAGCATCTCTCCAGTCACCACCCAGTGGTTTTTGAGGCGACGGATTCTATAGGCGGCGTGTGGAAGCACTGCGCTTATCGGACCACCCGGCTGCAGACGCCTCGCCGGGATTTTGAATTCTCCGATTACCCGTGGCCGCCGCAGACGAGGGGGAATGATGACTTTCCCACGCATTTGGAGGTCTTGGATTATTTGCATGGCTATGCAACGCATTTTGATGTGCTCAAGTTCGTCAAGTTTAATTGTAAAGTGGTTCAACTCCGATACATTGGCGGCCCGGAAGCTGAAGATTCCACGGAGGCCGGAGTGTACGGAAGCCTACTTAATGGCCGTCCTGTTTGGGAAGTCGCCGTTGAAGACACTCAGCTCAACACCACTCAGTGGTATGAATTGGAGTTGGTGGTGATGTGTGTGGGAAGATATGGAGATGTACCAAACATACCGAAATTCCCTCAAAACAAAGGTCAAGAAATTTTCAAAGGCAAAGTTTTACATTCAATGGACTATGCCAAGCTTGACCATGATGTTGCACGTGCCCTACTTCAACACAAGCGTGTTGCCGTTGTTGGTTATCGAAAATCTGCTATTGATTTGGCTGTTGAATGTGCCGAAGCAAATCAAGGACCTGAAGGGCAGCCCTGCACAATGGTGATTAGGTCATTGCATTGGACAGTCCCATCTTATAGAATATGGGGATTGCCCTTTTCCTTGTTTTACTCAACAAGATTCTCTCAATTCCTCCAAGAAAGCCCAAATCAAGGCTTCCTCAAGGCCCTTTTCTGCTCTCTCTTTTCTCCCATGGTGCTATTTACTTTACCTCTCTTCTTTTATAGAAAGGTTATTTCAAAGTTCATAGAGTCATATCTAACATGGAAGTTGCCATTAGAGAAGTATGGGCTAAAACCAGAGCACCCATTTGAAGAGGACTATGCATCTTGCCAAATGGCTATCATGCCAAAGAATTTCTTTGAGGAGGCAGAGAGAGGGAAGATTTTGTTCAAAAAGACATCTAAATGGTGGTTTTGGAGTGGTGGAGTTCAATTTGAAGATAACACCAAATTAGAAGCTGATGTTGTGATTCTCAACACTGGTTTTCAAGGCAAACAAAAACTTCAATCATTGTTGCCTCATCCTTTCAAAACCCTTTTGCTTGATTCCTCTCATATCATTCCTTTGTACAGGGGCGTGATTCATCCGCTAATACCAAACATGGGATTTGTGGGATATGTTGAGAGTGTATCAAACCTTCGTACTGGAGAGCTACGGTGCAAATGGCTGGCAAAATTGGCGGAAGATGCCTTCAAACTTCCTACCATTCACAAAATGCTTCAACAAATTGCAAATGAAATTCAAGTCATGAAGAACACAACACGTTTTTACAAGCGTCAATGTGTTTCTACCTTCAGCATTAGCTACACTGATGAAATTTCTCAAGATATGGAAAATGCTATTCACGTAAATTAG 1566 44.89 MAAAAANTGEQSHRRRSVSKVGIIGAGISGIAAAKHLSSHHPVVFEATDSIGGVWKHCAYRTTRLQTPRRDFEFSDYPWPPQTRGNDDFPTHLEVLDYLHGYATHFDVLKFVKFNCKVVQLRYIGGPEAEDSTEAGVYGSLLNGRPVWEVAVEDTQLNTTQWYELELVVMCVGRYGDVPNIPKFPQNKGQEIFKGKVLHSMDYAKLDHDVARALLQHKRVAVVGYRKSAIDLAVECAEANQGPEGQPCTMVIRSLHWTVPSYRIWGLPFSLFYSTRFSQFLQESPNQGFLKALFCSLFSPMVLFTLPLFFYRKVISKFIESYLTWKLPLEKYGLKPEHPFEEDYASCQMAIMPKNFFEEAERGKILFKKTSKWWFWSGGVQFEDNTKLEADVVILNTGFQGKQKLQSLLPHPFKTLLLDSSHIIPLYRGVIHPLIPNMGFVGYVESVSNLRTGELRCKWLAKLAEDAFKLPTIHKMLQQIANEIQVMKNTTRFYKRQCVSTFSISYTDEISQDMENAIHVN 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22378804 22383035 - ClCG08G009680.2 Cla08g00973 278628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00973 521 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 11 514 - -
Cla08g00973 521 Pfam Flavin-binding monooxygenase-like 20 293 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla08g00973 521 Pfam Flavin-binding monooxygenase-like 312 513 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla08g00973 521 PANTHER DIMETHYLANILINE MONOOXYGENASE 11 514 - -
Cla08g00973 521 Gene3D - 14 277 IPR036188 -
Cla08g00973 521 PIRSF FMO 294 520 IPR000960 GO:0050660|GO:0050661
Cla08g00973 521 PIRSF FMO 17 297 IPR000960 GO:0050660|GO:0050661
Cla08g00973 521 SUPERFAMILY FAD/NAD(P)-binding domain 20 295 IPR036188 -
Cla08g00973 521 Gene3D - 306 520 IPR036188 -
Cla08g00973 521 SUPERFAMILY FAD/NAD(P)-binding domain 20 446 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00973 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - csv:101205746 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01419 Cla-Chr3:29739174 Cla08g00973 Cla-Chr8:22378804 0 dispersed
Cla06g01185 Cla-Chr6:25060480 Cla08g00973 Cla-Chr8:22378804 6.74E-129 dispersed
Cla08g00973 Cla-Chr8:22378804 Cla10g00282 Cla-Chr10:3712294 4.17E-09 dispersed
Cla08g00973 Cla-Chr8:22378804 Cla05g00392 Cla-Chr5:3538043 1.31E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00973 Cla_Chr08 FPKM 6.12093 7.415649 7.346942 6.755339 7.615176 7.349065 7.949474 6.433112 6.149426 6.380637