Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00978 ATGGGAGGTGGTACGGTCGAAGTGGTTAGTAATAAAGGTTGTTCTAGGCTGTTTTTTGGGTTCTCATCACCGTTATCGTCATTGGGAGGTCTACAACAGCTTGAGTCCATGTCTCTCGCTTCTCCGTCTTCAAGGTCTGAACCGGTGAAAGCGCGGTTAGCCGGCCCCTTTACTGGACTTGTAATTTGCGTCACTGGCTTATCCAAAGAAGCAAGGAAACAAGTTAAGGAAGCTACTGAGAGATTAGGTGGACAATACAGCCCCAATTTGCATCCACAATGCACACATTTGGTGATCTTGTCGAAAAGTTACTACAGCTTAGGTGGACGCAAGTTTGAACACGCATTTAAGCATGGATCAAAAACTGGTCTCTTTGTTGTCTCTCTTGGCTGGTTTGTGGATAGTGTACGGAGAAATGTAAGACTGAGCGAGTCTCTTTATAATATCAAGAGTCTCGGAGAAAATAGTGGACGCCTGGATGAATTGAACCAACTAGTACGGTCCAGTGGTGATGGAAGCTCCTGCCTTCCAGTGGGCATTCGTGGAGTTGAACAAAGTGATATGATAGGAGAATCTCAACTACCATTCTCTAAAAAAGATCGTGACAGAAGGATGGCCTCTAATCTTTCTGGTCAATCCATGTATATTGATACAGACATTTCACCAGAGCTGCGACATAAGGTTATTGAGGCTGCTAAGGGAGTCGGTGCCTCACTTGTGGATCAATGGTTTGCTGGTTGCAGCACAAGTCACGTGGTTTGTGAAAGGACTTCCATCCATCGATATCTTGGCCACTCCAGCAATTTAGTTACGCCACTCTGGGTTCTCAAAACTGTGAAGGAGAAACATGTGCAAAGACTTATTCACATGTCTGCTGACTTGGCTCGACAGATTAGTTCAACGCTTGAAGATCTTTGTGCAGAAAACTTTACAGAGGCAAAAAATAGGCAACCAGAAGACGCTAGAAATTCTAGAAGTAAGGCAACCCAAGCAGAACGCGAACAGATTATTTCAAATGCTAAAATTGGGGTGAGGAAACGTCGTGCTTGTCGAATGCAGACTTGTCAAAACCCAATTCGTCCATTAACCCCAAGTAGCCTTTTGGATTCAATCTGCTGGTCAATATCTGAGCCAAGTTCATCTGCTTCTATTTACACAGACTCTTTCAGTAGTGAAGGTGTTAGTGAGCATCATACTCCAGAGTTCTTTGATGCTACAGGAGATGACAAGGAATCAGAAGCTTCATTTGCAAACTTAACTCGCCCACTCAGTGAAAGTTCAAGTAGTTTCCAACATGGACACCACTGCCTTCTCTCATTTTTTACTTTCACCTGCAGTGAGAAATCTGAAGTTGTATTCAAAAACCATTTCTTGACCATACTATTTCCAGTGGATCGTTTCTTCGAGATGGGACCATCTTCAAGGACCTTTTTTAGCAACAAGGGGTTCACATGTTTCCAGATTCTCGATCATATTTATGCGTTTTATCAGGAGAACATGTCAGATCATGAAATAGAGATGGCAATTCACACTGACTCAAGGCATGCTGACCGACTTCGATCGGTTTATTGTAGAGAAACAACAGAATCTGGTCATACAGTTTTCAAAAGGATAGAATTCCTGGGGAGCCGCAGAAGTTTTGAAATGTTGAAGCGTGTTAGCGTTGACAACAACAGTAATGTCTACGAGTTATTGATCAGAGCATGA 1707 43.12 MGGGTVEVVSNKGCSRLFFGFSSPLSSLGGLQQLESMSLASPSSRSEPVKARLAGPFTGLVICVTGLSKEARKQVKEATERLGGQYSPNLHPQCTHLVILSKSYYSLGGRKFEHAFKHGSKTGLFVVSLGWFVDSVRRNVRLSESLYNIKSLGENSGRLDELNQLVRSSGDGSSCLPVGIRGVEQSDMIGESQLPFSKKDRDRRMASNLSGQSMYIDTDISPELRHKVIEAAKGVGASLVDQWFAGCSTSHVVCERTSIHRYLGHSSNLVTPLWVLKTVKEKHVQRLIHMSADLARQISSTLEDLCAENFTEAKNRQPEDARNSRSKATQAEREQIISNAKIGVRKRRACRMQTCQNPIRPLTPSSLLDSICWSISEPSSSASIYTDSFSSEGVSEHHTPEFFDATGDDKESEASFANLTRPLSESSSSFQHGHHCLLSFFTFTCSEKSEVVFKNHFLTILFPVDRFFEMGPSSRTFFSNKGFTCFQILDHIYAFYQENMSDHEIEMAIHTDSRHADRLRSVYCRETTESGHTVFKRIEFLGSRRSFEMLKRVSVDNNSNVYELLIRA 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22455627 22461204 + ClCG08G009730.2 Cla08g00978 278633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00978 568 MobiDBLite consensus disorder prediction 313 335 - -
Cla08g00978 568 SMART BRCT_7 206 282 IPR001357 -
Cla08g00978 568 SMART BRCT_7 54 139 IPR001357 -
Cla08g00978 568 SUPERFAMILY BRCT domain 209 285 IPR036420 -
Cla08g00978 568 SUPERFAMILY BRCT domain 54 149 IPR036420 -
Cla08g00978 568 CDD BRCT_TopBP1_rpt2_like 55 139 - -
Cla08g00978 568 Pfam twin BRCT domain 60 131 IPR001357 -
Cla08g00978 568 Pfam Family of unknown function (DUF6699) 479 552 IPR046522 -
Cla08g00978 568 Gene3D BRCT domain 55 151 IPR036420 -
Cla08g00978 568 MobiDBLite consensus disorder prediction 313 329 - -
Cla08g00978 568 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 568 - -
Cla08g00978 568 ProSiteProfiles BRCT domain profile. 52 149 IPR001357 -
Cla08g00978 568 ProSiteProfiles BRCT domain profile. 204 282 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00978 - - - csv:101211759 936.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00978 Cla-Chr8:22455627 Cla11g01556 Cla-Chr11:29283771 6.26E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00978 Cla_Chr08 FPKM 11.01913 11.84793 16.577211 17.263597 3.350004 3.749381 2.805627 0.13541 0.0 0.0