Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00984 ATGAGCCTACGCAAGGGCTCTAAGGTTTGGGTGGAAGATAAAGATTTTGCTTGGGTGGCAGCTGAAGTCCTCGACTTCGTTGGCAAACAAGTTCGAGTTTCAACTGTTACTGGAAAGAAGGTGTTGGCTCTTCCTGAGAAGCTTTTGCCGAGGGACGCGGATGAGGATGACCACGGAGGAGTGGATGACATGACGAAGTTGACCTATTTGAATGAGCCTGGCGTGCTTTATAATCTTCAAAGAAGATATTCTCTCAATGACATATATACATATACTGGTAGCATTTTGATTGCTGTTAATCCATTCACAAAGCTTCCCCATCTATACAATGTTCACATGATGGAGCAGTACAAGGGAGCACCTTTTGGGGAACTGAGCCCTCATGTTTTTGCTGTTGCTGATGCATCGTACAGAGCAATGATTAGTGAGGGTCGAAGCCAGTCTATATTGGTCAGTGGAGAGAGTGGGGCAGGGAAAACTGAGACAACAAAATTGATTATGCAGTATCTTACATTTGTTGGAGGGCGAGCGGCAGGGGATAACAGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCTTTACTGGAAGCATTTGGAAATGCAAGGACCGTTAGAAATGATAATTCAAGTCGTTTTGGAAAGTTTGTTGAAATTCAATTTGATACCAGTGGTAGAATATCGGGTGCTGCAATTAGAACTTATCTTCTGGAACGGTCTCGTGTTGTACAAATCACGAACCCGGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCCGGAAGGGATGCTGAGAAGTACAACTTAGACCACCCGAGTCATTTCCGATACTTAAATCAAAGCAAGACCTATGAGTTAGATGGAGTGAGCAATGCTGAAGAGTATATTAGGACAAGGAGGGCAATGGACATAGTTGGTATCAGTCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCCGCGATTTTGCATCTGGGGAACGTTGAGTTTTCTCCTGGAAAAGAACACGATTCTTCAGTCTTGAAGGACGAAAAGTCTACCTTTCATTTAGGGGTGGCTTCTAATCTTCTCATGTGTGATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCAAACTCGTGAAGGAATTATTGTCAAAGCGCTAGACTGCGAAGGTGCTGTTGCTAGTCGGGATGCACTGGCAAAGACTGTTTATGCTCGTCTGTTTGATTGGCTTGTTGATAAGATTAACCTGTCCGTCGGGCAAGATTTAAATTCTCAATTTCAAATTGGGTTACTGGACATTTATGGTTTTGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAACTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTCTTTAAGATGGAACAGGAGGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTCATTGACAATCAGGATGTGTTGGATTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTATGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTGTTTCAGAATTTTCGTACTCATCCCAGGCTGGAAAGAACAAAATTTTCAGAAACAGATTTCACCCTTTCTCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTAGACAAAAATCGCGATTATGTTGTAGTAGAGCATTGCAATCTATTGGCTTCTTCTAAATGCAATTTTGTTGCTGGCCTTTTCTCTTCCTTACCAGAGGAATCTTCAAGATCATCATATAAATTTTCTTCCGTAGCCTCAAGATTTAAGCAACAACTTCAAGCACTCATGGAGACATTGAATTCTACCGAGCCCCATTATGTACGCTGTGTGAAGCCAAACTCTCTTAATAGGCCCCAGAAGTTTGAGAACCTAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTAGCAGGTTATCCCACCAGACGAACTTATGCAGAGTTCATTGACCGTTTTGGTTTGTTGGCACCTGATTTATTGGATGGAAGCTACGATGAAAGATTGATTACAGAAAAGATTCTACAAAAGTTGAAGCTAAAAAATTTTCAGTTGGGTAGGACCAAAGTGTTTCTTAGGGCTGGTCAAATTGGAATACTGGATGCTCGAAGAGCTGAAGTATTAGACAATGCTGCAAAGTGCATTCAACGCCGATTACGAACATATCATGCGCGCAGGGATTTTCTATTGATGCGTTCTACTGCAATTGCACTCCAAGCATATTGCAGAGGATGCCTTGCCCGAAATTTTTATGTAGCAAAACGAGAAAGCACTGCTGCCACTACGATACAGAAATATATTCGCAGGTGGTTCTTCAGGAATATTTATTTGGAGATCTATTCAGCTGCTCTAACCATACAGTCCAGTATTCGTGGTTTTGCAACTCGCAGTAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCGATGGAGGACATTCAAAGTTCGTGCTGTTTTCCATCGCCACCAAGCTTCTATTATTGCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGTAGACTTAAACAGGAGGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAAAACAAACTTGAGAAGCAGTTGGAAGATCTTACATGGCGGTTGCATTTGGAGAAAAGATTGCGGGCTTCCAATGAAGAGGCCAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGGAATCCTTGAGTCTGGAGCTAGATGCAGCGAAATTGGCTGCAATCAATGAGTGCAACAAAAATGCTGTGCTGCAAAACCAAATTGAATTGTTGGCCAAGGAGAAGTCTGCTTTTGAAAGAGAAATTGTAGCGGTAGTTGAATTAAAAAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGAGGCCATGGAAAAACGGAACTCAGCTCTGGAAGTTAAGCTTGTTGAGGCACAAAAGGATGGTAACCACACTGTTGAAAAGTTGCAGGATGTTGAACAGAAATGCACTAAGCTTCAACAGAATGTGAAAAGTCTTGAAGAGAAACTCTCAGTTCTAGAGGACGAGAATCATGTATTGCGACAGAAAGCCTTAAGTGCAACTCCAAGGAGCAACCGACCCAATTTTGTAAGGGCATTATCGGAGAAATCCTCAGTTGCGCTTGTCCCTAATGCTGAGCGGAAAACTCTATTTGAGTCACCAACACCCACAAAACTGGTTGCACCTTTTTCACAAGGTCTTTCTGAATCACGGCGAACAAAATTAACTGTAGAGAGACACCAGGAAAACTATGAAGTCCTTTCTAGGTGTATTAAAGAAAATTTGGGGTTTAAAGGTAGCAAGCCACTGGCCGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTTGAATCGGAACGAACAGTTATTTTTGACTATATAATTGAAGGAATCAATGATGCCCTCAAGGCTGGGGACGAGAATATTACCTTGCCATATTGGTTGTCAAATGCGTCTGCACTACTATGCCTCTTGCAAAGAAATTTGAAGTCAAATGGTTTTTTGAGCGCAGCTTCTCAGCGTTCCACAGGTTCCACTGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTGGGTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCAATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATCTTTGGCTTGATCCGTGATAATTTGAAAAAAGAATTATCTCCATTGCTGAGCTCATGTATTCAGGCACCAAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAGATCGCCTGGTGTTCCCCAGCCATCTACAAGTAGTCCATGGGATAACATAATAAAGTTTTTAGATTCTTTGATGAGTCGATTACGTGCGAATCATGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAATATTTCACTTTTTAATAGCCTTCTTCTGCGACGTGAATGTTGTACGTTTTCAAATGGGGAGTACGTGAAATCTGGTCTTGCAGAACTAGAGAAGTGGATTGGCAATGCAACAGAGGAGTATTCAGGGACCTCTTGGCACGAGCTAAACTATATAAGGCAAGCTGTCGGGTTTCTGGTAATACATCAGAAGCGAAAGAAATCACTAGAAGAGATAAGACAGGATCTTTGCCCCGCATTGACCGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGATAAATACGGGACTCAGAGTGTGTCAAACGAGGCAAGTTTTATACCCTATTTCTAG 4365 41.42 MSLRKGSKVWVEDKDFAWVAAEVLDFVGKQVRVSTVTGKKVLALPEKLLPRDADEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDNRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTSGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYNLDHPSHFRYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDEKSTFHLGVASNLLMCDSNLLVSALCTRSIQTREGIIVKALDCEGAVASRDALAKTVYARLFDWLVDKINLSVGQDLNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACMFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSKCNFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYAEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARRDFLLMRSTAIALQAYCRGCLARNFYVAKRESTAATTIQKYIRRWFFRNIYLEIYSAALTIQSSIRGFATRSRFLHDRRNKAAVLIQARWRTFKVRAVFHRHQASIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLESLSLELDAAKLAAINECNKNAVLQNQIELLAKEKSAFEREIVAVVELKKENAFLKSALEAMEKRNSALEVKLVEAQKDGNHTVEKLQDVEQKCTKLQQNVKSLEEKLSVLEDENHVLRQKALSATPRSNRPNFVRALSEKSSVALVPNAERKTLFESPTPTKLVAPFSQGLSESRRTKLTVERHQENYEVLSRCIKENLGFKGSKPLAACIIYKCLLNWHAFESERTVIFDYIIEGINDALKAGDENITLPYWLSNASALLCLLQRNLKSNGFLSAASQRSTGSTGLASRISQGLKSPFKYIGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLSSCIQAPKAARVHAGKSSRSPGVPQPSTSSPWDNIIKFLDSLMSRLRANHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATEEYSGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEASFIPYF 1454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22519933 22573580 - ClCG08G009790.2 Cla08g00984 278639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00984 1454 Coils Coil 972 1006 - -
Cla08g00984 1454 Gene3D Kinesin motor domain 62 659 IPR036961 -
Cla08g00984 1454 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Cla08g00984 1454 Pfam IQ calmodulin-binding motif 783 800 IPR000048 GO:0005515
Cla08g00984 1454 Pfam IQ calmodulin-binding motif 734 752 IPR000048 GO:0005515
Cla08g00984 1454 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Cla08g00984 1454 Pfam IQ calmodulin-binding motif 759 772 IPR000048 GO:0005515
Cla08g00984 1454 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 Pfam DIL domain 1334 1437 IPR002710 -
Cla08g00984 1454 Pfam Myosin head (motor domain) 61 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 777 IPR027417 -
Cla08g00984 1454 Coils Coil 920 940 - -
Cla08g00984 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 878 IPR027417 -
Cla08g00984 1454 Coils Coil 1014 1048 - -
Cla08g00984 1454 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Cla08g00984 1454 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 PANTHER MYOSIN 3 1448 - -
Cla08g00984 1454 Coils Coil 864 908 - -
Cla08g00984 1454 CDD MYSc_Myo11 73 717 IPR036018 -
Cla08g00984 1454 Gene3D - 731 781 - -
Cla08g00984 1454 Gene3D - 782 828 - -
Cla08g00984 1454 Gene3D - 829 879 - -
Cla08g00984 1454 Gene3D - 249 306 - -
Cla08g00984 1454 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Cla08g00984 1454 CDD MyosinXI_CBD 1110 1447 IPR037975 GO:0007015
Cla08g00984 1454 ProSiteProfiles IQ motif profile. 805 832 IPR000048 GO:0005515
Cla08g00984 1454 SMART DIL_2 1333 1440 IPR002710 -
Cla08g00984 1454 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Cla08g00984 1454 ProSiteProfiles Dilute domain profile. 1159 1454 IPR002710 -
Cla08g00984 1454 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Cla08g00984 1454 Gene3D - 663 730 - -
Cla08g00984 1454 Coils Coil 948 968 - -
Cla08g00984 1454 Gene3D - 435 620 - -
Cla08g00984 1454 PANTHER PROTEIN OPAQUE1-LIKE 3 1448 - -
Cla08g00984 1454 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla08g00984 1454 SMART iq_5 731 753 IPR000048 GO:0005515
Cla08g00984 1454 SMART iq_5 827 849 IPR000048 GO:0005515
Cla08g00984 1454 SMART iq_5 779 801 IPR000048 GO:0005515
Cla08g00984 1454 SMART iq_5 850 872 IPR000048 GO:0005515
Cla08g00984 1454 SMART iq_5 754 776 IPR000048 GO:0005515
Cla08g00984 1454 SMART iq_5 802 824 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00984 Cla-Chr8:22519933 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla08g00984 Cla-Chr8:22519933 Cla05g00393 Cla-Chr5:3553666 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00984 K10357 - csv:101210527 2769.96