Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00996 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAACGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTCAACAAGAGAATCCGACCCTGATGTGGTTTACATCAAGCACGTGTGGATACCTTTCTCTATTGTTCGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCAGTTAG 837 45.4 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCQQENPTLMWFTSSTCGYLSLLFGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYRPRLSSAS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22725908 22733142 + ClCG08G009920.2 Cla08g00996 278651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00996 278 SUPERFAMILY FYVE/PHD zinc finger 169 215 IPR011011 -
Cla08g00996 278 PANTHER CPG BINDING PROTEIN 4 144 IPR045104 GO:0006355|GO:0042393
Cla08g00996 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 214 IPR013083 -
Cla08g00996 278 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 145 212 - -
Cla08g00996 278 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cla08g00996 278 MobiDBLite consensus disorder prediction 145 173 - -
Cla08g00996 278 PANTHER CPG BINDING PROTEIN 145 212 IPR045104 GO:0006355|GO:0042393
Cla08g00996 278 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00996 - - - csv:101208889 393.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00996 Cla-Chr8:22725908 Cla10g00714 Cla-Chr10:11292447 7.08E-91 dispersed
Cla08g00996 Cla-Chr8:22725908 Cla07g00398 Cla-Chr7:4960689 1.52E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00714 . 99 350 Alfin-like Transcription Factor Family AT1G14510 84.1 4.1e-114 407.9
Cla08g00996 . 9 212 Alfin-like Transcription Factor Family AT1G14510 66.8 2.0e-81 299.3
Cla10g02093 . 14 251 Alfin-like Transcription Factor Family AT1G14510 59.3 5.5e-79 291.2
Cla07g00398 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.4e-77 286.6
Cla09g00078 . 10 324 Alfin-like Transcription Factor Family AT1G14510 51.1 2.3e-77 285.8
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G26210 72.8 3.6e-94 341.7
Cla11g00146 CCT 494 867 Alfin-like Transcription Factor Family AT5G26210 51.3 6.2e-94 340.9
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT5G26210 67.1 1.3e-88 323.2
Cla09g00078 . 1 326 Alfin-like Transcription Factor Family AT5G26210 50.3 1.4e-82 303.1
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Cla10g02093 . 14 253 Alfin-like Transcription Factor Family AT5G26210 57.1 8.6e-80 293.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT3G42790 72.0 1.8e-90 329.3
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT3G42790 66.8 1.5e-84 309.7
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.4e-81 298.5
Cla10g02093 . 22 253 Alfin-like Transcription Factor Family AT3G42790 58.3 9.4e-79 290.4
Cla07g00398 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Cla10g02093 . 19 254 Alfin-like Transcription Factor Family AT5G05610 75.5 4.3e-105 377.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G05610 63.2 3.2e-84 308.5
Cla08g00996 . 8 212 Alfin-like Transcription Factor Family AT5G05610 62.2 8.5e-77 283.9
Cla07g00398 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Cla10g02093 . 57 254 Alfin-like Transcription Factor Family AT3G11200 76.2 2.5e-86 315.5
Cla09g00078 . 84 326 Alfin-like Transcription Factor Family AT3G11200 56.5 1.5e-70 263.1
Cla10g00714 . 142 352 Alfin-like Transcription Factor Family AT3G11200 64.2 7.4e-70 260.8
Cla08g00996 . 44 212 Alfin-like Transcription Factor Family AT3G11200 61.4 7.4e-62 234.2
Cla10g00714 . 99 259 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cla08g00996 . 1 159 Alfin-like Transcription Factor Family AT2G02470 74.8 3.0e-64 242.3
Cla10g02093 . 14 169 Alfin-like Transcription Factor Family AT2G02470 65.4 4.8e-54 208.4
Cla11g00146 CCT 494 734 Alfin-like Transcription Factor Family AT2G02470 50.2 1.1e-53 207.2
Cla07g00398 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.1e-53 207.2
Cla09g00078 . 5 200 Alfin-like Transcription Factor Family AT2G02470 58.1 1.5e-52 203.4
Cla08g00996 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 7.9e-70 260.4
Cla10g00714 . 101 270 Alfin-like Transcription Factor Family AT5G20510 71.5 8.2e-67 250.4
Cla11g00146 CCT 494 736 Alfin-like Transcription Factor Family AT5G20510 50.8 1.1e-58 223.4
Cla09g00078 . 1 204 Alfin-like Transcription Factor Family AT5G20510 57.5 9.4e-55 210.3
Cla07g00398 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Cla10g02093 . 21 171 Alfin-like Transcription Factor Family AT5G20510 61.8 3.7e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00996 Cla_Chr08 FPKM 7.400233 8.276909 8.575552 8.122747 6.942901 6.861043 7.1738 8.961167 8.970998 9.12626