Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00996 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAACGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTCAACAAGAGAATCCGACCCTGATGTGGTTTACATCAAGCACGTGTGGATACCTTTCTCTATTGTTCGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCAGTTAG 837 45.4 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCQQENPTLMWFTSSTCGYLSLLFGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYRPRLSSAS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22725908 22733142 + ClCG08G009920.2 Cla08g00996 278651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00996 278 SUPERFAMILY FYVE/PHD zinc finger 169 215 IPR011011 -
Cla08g00996 278 PANTHER CPG BINDING PROTEIN 4 144 IPR045104 GO:0006355|GO:0042393
Cla08g00996 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 214 IPR013083 -
Cla08g00996 278 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 145 212 - -
Cla08g00996 278 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cla08g00996 278 MobiDBLite consensus disorder prediction 145 173 - -
Cla08g00996 278 PANTHER CPG BINDING PROTEIN 145 212 IPR045104 GO:0006355|GO:0042393
Cla08g00996 278 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00996 Cla-Chr8:22725908 Cla10g00714 Cla-Chr10:11292447 7.08E-91 dispersed
Cla08g00996 Cla-Chr8:22725908 Cla07g00398 Cla-Chr7:4960689 1.52E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00996 - - csv:101208889 393.66