Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00996 | ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAACGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTCAACAAGAGAATCCGACCCTGATGTGGTTTACATCAAGCACGTGTGGATACCTTTCTCTATTGTTCGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCAGTTAG | 837 | 45.4 | MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCQQENPTLMWFTSSTCGYLSLLFGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYRPRLSSAS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22725908 | 22733142 | + | ClCG08G009920.2 | Cla08g00996 | 278651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00996 | 278 | SUPERFAMILY | FYVE/PHD zinc finger | 169 | 215 | IPR011011 | - | |
Cla08g00996 | 278 | PANTHER | CPG BINDING PROTEIN | 4 | 144 | IPR045104 | GO:0006355|GO:0042393 | |
Cla08g00996 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 214 | IPR013083 | - | |
Cla08g00996 | 278 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 145 | 212 | - | - | |
Cla08g00996 | 278 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Cla08g00996 | 278 | MobiDBLite | consensus disorder prediction | 145 | 173 | - | - | |
Cla08g00996 | 278 | PANTHER | CPG BINDING PROTEIN | 145 | 212 | IPR045104 | GO:0006355|GO:0042393 | |
Cla08g00996 | 278 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g00996 | Cla-Chr8:22725908 | Cla10g00714 | Cla-Chr10:11292447 | 7.08E-91 | dispersed | |
Cla08g00996 | Cla-Chr8:22725908 | Cla07g00398 | Cla-Chr7:4960689 | 1.52E-94 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00996 | - | - | csv:101208889 | 393.66 |