Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00998 ATGGTCGACTGGCGTTCATTCTTGCTCACACTTCTCAGATTCGACTCAGTAAACCGGTCCTTGCCTTGGCTACATCCTCAACGGCATCCAATTAGCTCCCCAGAGAGTATTAGAAAGAGGCTTGATGAAGCCGCCATTGAAGGAAACGTAGCAACGTTGTTAGAATTACTCCAACAAGATCCAATGTTACTGGCCAGACTCAACCTTAACGACTTCAACGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACGTGACATTTGTGGATGAGATTCTCAAGCGAAGGCCTCAGCTGGCCAGAGACTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCGAGGGCTCTTTAGACATTGTGCAAATTCTGCTGCGAGTTGATCCTGATATGTGTTCTATCTGCAATGAAGACGGCCGGAATCCTATTCATCTCGCCGCCATGAGAGGCCGGGTTGATGTCTTGGCCGAGCTCGTTCTAGTCAGACCGGCAGCCGCTCGAACTGCCGTGGACGGCGGGGGAACGGTGTTGCATTTATGTGTGAAGTTCAACCAGGTGGAGGCTTTGAAGATGTTGATTGAAACTATGGAAGTGAAAGAGAAAGACAATGATTTTATTAATACTCAGGATGATTATGGCTTCACTATCCTTCATTTAGCAGTCTCACACAAACAACTTCAGACCGTAGAATATCTAATCAACCATACTGGAATCGAAGTAAATGCAAAAACCTCAAATGGGTTAACACCTCTAGACATTCTAACTCAAAGCCAAAGAGATTTAAAGGACTTGGACATTGCAGAGACTCTCACAGCCGCCAATGCCATCCGCACCACAAACAAAAAACCGCCGCCGCCGCCGCCGTCTTCTTGTATCAAGATCAAAAACGAAAAGAGTTGTCAAACATGGAGATGGTTTTTTTCGGCCTTATTCCACAATGGGGATTGGTGGTTTATGAACGAAAAAAGCGAGTGGCTAATGAAGCAAGAGGCATTAATGGTTGTAGCATCCTTAATTGCAACAATGGCTTTTCAAGCCGGAGTGAACCCTCCCGGCGGCATTTGGCAAGACGACAAAGCGTCGGGAAATCCAAGACAGACTGCTGGAACGTCGGTGATGGCCGGAAAAGACAAAGAAACATACAATAAATATCTTGTGTCTAACACAGTAGGGTTCATGACTTCGTTCATAGCAATTGTGATGATTCTGATTGGGTTGCCTCAAAAACGTATTTTCATGAGGGTTTTGATCATGACAATGTGTGCTGCTGTGAGTGCCATGGCTTTCACTTATGGATATTCCATAAAGTTTTTCACTCCACTACCACCACAACCAACTGGAGCCTCCAACTCCACTTCTCCGCCTCCATCTCCACCTCCATCTCCACTTACCATCTGGCCGCGCCCCAAGTCGGACTCAGTCATCTCTTGGATTTCCATTATTGTGGCCATGGTGGTCACTTCTTCCATGGGGATTTTCTTGGTCGCCAAGCTCTTCTACGTTCATTCTCGACAGAATAAACCTACTGGACACCCGCTTCCTCGCCCATGA 1557 47.33 MVDWRSFLLTLLRFDSVNRSLPWLHPQRHPISSPESIRKRLDEAAIEGNVATLLELLQQDPMLLARLNLNDFNETPLHVASLLGHVTFVDEILKRRPQLARDLDSRRCSALHLAAAEGSLDIVQILLRVDPDMCSICNEDGRNPIHLAAMRGRVDVLAELVLVRPAAARTAVDGGGTVLHLCVKFNQVEALKMLIETMEVKEKDNDFINTQDDYGFTILHLAVSHKQLQTVEYLINHTGIEVNAKTSNGLTPLDILTQSQRDLKDLDIAETLTAANAIRTTNKKPPPPPPSSCIKIKNEKSCQTWRWFFSALFHNGDWWFMNEKSEWLMKQEALMVVASLIATMAFQAGVNPPGGIWQDDKASGNPRQTAGTSVMAGKDKETYNKYLVSNTVGFMTSFIAIVMILIGLPQKRIFMRVLIMTMCAAVSAMAFTYGYSIKFFTPLPPQPTGASNSTSPPPSPPPSPLTIWPRPKSDSVISWISIIVAMVVTSSMGIFLVAKLFYVHSRQNKPTGHPLPRP 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22740303 22746634 - ClCG08G009940.2 Cla08g00998 278653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00998 518 PANTHER - 39 442 - -
Cla08g00998 518 MobiDBLite consensus disorder prediction 446 467 - -
Cla08g00998 518 MobiDBLite consensus disorder prediction 449 467 - -
Cla08g00998 518 ProSiteProfiles Ankyrin repeat region circular profile. 140 161 - -
Cla08g00998 518 Pfam Ankyrin repeats (3 copies) 111 204 IPR002110 GO:0005515
Cla08g00998 518 ProSiteProfiles Ankyrin repeat profile. 140 162 IPR002110 GO:0005515
Cla08g00998 518 Pfam Ankyrin repeats (many copies) 209 255 IPR002110 GO:0005515
Cla08g00998 518 Pfam Domain of unknown function 330 436 IPR026961 -
Cla08g00998 518 SMART ANK_2a 140 169 IPR002110 GO:0005515
Cla08g00998 518 SMART ANK_2a 174 203 IPR002110 GO:0005515
Cla08g00998 518 SMART ANK_2a 214 244 IPR002110 GO:0005515
Cla08g00998 518 SMART ANK_2a 106 135 IPR002110 GO:0005515
Cla08g00998 518 SMART ANK_2a 248 283 IPR002110 GO:0005515
Cla08g00998 518 SMART ANK_2a 72 101 IPR002110 GO:0005515
Cla08g00998 518 SUPERFAMILY Ankyrin repeat 42 259 IPR036770 -
Cla08g00998 518 PANTHER CASKIN 39 442 - -
Cla08g00998 518 Gene3D - 23 286 IPR036770 -
Cla08g00998 518 ProSiteProfiles Ankyrin repeat region circular profile. 106 133 - -
Cla08g00998 518 ProSiteProfiles Ankyrin repeat profile. 106 133 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00998 - - - bhj:120075898 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01326 Cla-Chr7:30479086 Cla08g00998 Cla-Chr8:22740303 2.10E-50 dispersed
Cla08g00998 Cla-Chr8:22740303 Cla09g00161 Cla-Chr9:1688606 2.36E-43 dispersed
Cla09g01210 Cla-Chr9:15167867 Cla08g00998 Cla-Chr8:22740303 9.63E-15 dispersed
Cla08g00998 Cla-Chr8:22740303 Cla08g01000 Cla-Chr8:22755749 2.68E-17 proximal
Cla08g00997 Cla-Chr8:22736000 Cla08g00998 Cla-Chr8:22740303 8.20E-21 tandem
Cla08g00998 Cla-Chr8:22740303 Cla08g00999 Cla-Chr8:22752001 3.17E-15 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00998 Cla_Chr08 FPKM 8.216355 10.026043 10.46888 9.373235 1.501573 1.554434 1.225673 3.374335 5.384518 4.922239