Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01002 ATGAAGTCTGGGAATGGTGATGGCTTAGGGGAGTCTGATGGGGGACGGTTGCTTGAGGAAATTGAGGCAATAAGTAAAGCTCTGTACTTGCACAAGGGCCACACAAACTCAATTGTTTATCCCCCTGATGGACGGCCAGGATCCCACTTGGCTGAATCAAAATCAAGATTCAACCAGGGATATCATAAGGATGGGGAATCATTGGTGGATGAAACTGAAAGAAGGTCATCATCTGCATGGAACTGGAAGAAATCTTTGAAAGCTCTTACTCATATTGGGCACCGCAAGTTCAACTGTGTATTCTATCTCAAGGTTCATTCCATAGAAGGCGTGCCTCCAAGTTTCAATGGTTATAGTTTAAGTGTACATTGGAAAAGGAAGGATGAGGTTTTGCAAACTCGTCCATCGAAGGTTTTCCAAGGCATGGCTGAATTTGATGAGACCTTGATCCACAAATGTGTGATATATGGTGGGAGAAGTTTGGCTAATCACTCGGCGAAATATGACCCTAAGCTTTACTTGATCTATGTTTCTATGCTTGGAGCACCAGGGCTTGATTTTGGGAAGCATTGGGTTGACCTCACAAGGATTTTACCTCTTACCTTGGAGGAGCTTGAGGGGGATAAATGTTCTGGGAATTGGTCGACCAGCTTTCGACTTGCAGGCAATGCGAGAGGTGCTAGCCTAAACGTCAGTTTCAGTTTTTTAGTAACCAAGGACGATCCGATGAAATTGAGCGGTCCTGAAAATGTTGTCCAACTCCTGAAGTTATTGCACCATAAGTCAAGGATTTGTAACTATGATGCACATCCTACTTCAACCAATTTAAAAGGGCCTCCAAGTCCAGATGGAAATATTTCGCATAGTCTAGAATATGAATCTATTACCTCTACTCAGATTTTTGACGAACTAAATCCAAAATTGGAGCTCTCCAAGTCGATTAACCTTTTGTATAGTAAGATGGATGAGGCAGATCAGCATAAGTCAGAGCATTCAGGTTCTGAATTGGATGAGCAGCTCGAATTAAAATCTAATGAGGAAAACAAGTCTGATGAAGTAACTGGTGGAGGTAGTTATGACTCTGGTGAGTTTTCCGTTATTGAATGTGGGATTGAATTAGCTGGGACAGAAGATAGCTTGGATAAAGTTTCTGTTCCGACTATTGAGGGCTCCAAAGTAGAAACTGTTTCTTTGGATGAGATCATAGAAGACGACAAAGTTGCCATCGAGATGAAGTCAAGCGTCATGTTGAAGGATGCAGTTTGCGTTGTTCATGTAGATGACACCGCAGAGGACGACCTCGAATATGAAGAGAATAACCTAAAACTAAAAGTGGAAGAAGTTGCTTCAGATGAGTTGAGTTCAGATTCTGATCTCAAGTGGACATCACATTCGGTGGAGACTGATTCTCCATTAGCTGTTGGCAAGCTTGTTGATCATGAAAACGATATGGATGCCAAGGAGAATTGTGCTAGAACATCTCTTAGCCTAGATGAGTCTTATGAATCCGTGGCCAGTGATTTTCTAAAGATGCTGGGGTTGGAGCATGGTTCTGCGAGGTTTTCAGATCCTGATATATTGTCTCCTAGAGAGCGCTTATTGAGAGAATTTGAGGAGGAATCCCTAATTTTTGGTAATCCATTATTGGATTTTACAGCTGCAGAAGAGTGGCAGGATTTTGGAAGTGTTGACATGGAGTTTGCTTCTGAAAATCAAGATGAGGATTTTGATTTTTCTTCCATTTATGTTGCTGAAGAAGTACAAGAGGAGGGGCATCATCAGTCCTTGAGAAATAGAAGGAACGCCAAAATTCTTGAAGACTTGGAGACGGAACATTTAATGAGAGAATTTGGCTTAAACGAGAGAGATTTTGAGCACTCTCCACATTATAGTTCAAGTGGATTTGGAAGTCCCATTGAGTTGCCCCTAGAAGAAGAGCCATCAAAGTTATCTTCACTTGGAGAAGGTTTTGGTGCATTTCTTAAGATGTACGGTGGCGGATTTTTGCGGTCCATGAGTCCTTGGCTCTCTCAGAACACTAGCATTGGACAGAGCTTAGTCATTCAATGTTCTGAACCAGTTGTTCTACCTGCTGAAATGGGTCATGATATTATGGAGATAGCACAGAATTTAGCATTGGCAGGAACTGAAAACCTTTCGACACTTGCTAAAAAGCTGATGCCGTTGGACGATATAACCGGGAAAACTCTCCAGCAAATGGTATCAGAGTGTCCTCCCAGCAAAATATTGCTTGAGAGGGAGCCTATGATCGAGAATAACGTGTTGTGTAGTTCGGTTTCATTCTGCGAAAGGAAAGACCTCGAAGGATTGCCATCTCATCAAAACGATACTAGTCTTCAATCTCTTCTGAATTCCGAGATGGATCAAGACCTTGTGTCACCTGATGATCTAGCATTTCTGGCAATAGAAAAGATCGAAACTCTCCTAATAGAAGGATTAAGAATACAATCTGGCTTGACAAATGATGAGACGCCAGCACAAATCACTGCCCGCCCTTTTCATCGTGTGCCAGCCTGTCGACGGAGGCGTTCCAATTTGGGCGGTTCTTGTAGCTCGGAAGGATTAAAGGAACTGCAGTTCATTGATCGCCCTGATACAGCAAGTGATGTTGTTGGGTTGATGGATCTTTCTATAACGTTGGAGCACTGGTTAAGGCTTGATGCTGGTAACATTAATGACGATGATGAAAATGGTCAGCACATTATGAAGACTCTTGTGGCCCATGGTGCTAACTATGCAGATATAATTGAAAGACTATCAAAAGATATCAACTCTGGGAAATCCAGCAAAGATCTGGGATTGTTTGGGAACAAGCTTGTGGTGGCTCTAATGGTGCAACTTAGAGATCACTTGCGAGACCATGAACCAGTTGGTGGCCCAATGATGTGCGTAATGGAGGCCGAGAGGCTTTTTATCAACACAGCTCGTGACACGGCCAGTGAAACGAGCAATGTCAACAATGGGAGCGAACCATTGCAAGCACAAGAAGACAGTCATGAAACTAACAAGAGCCAGGAGAAAGCAGATGAAGGACACTTCATTCGTGCATTTAAAATCTCTGCTATTCATCTTTTGGGTGTAAACTCTGTGCCTAATAAGATGCATTTCTGGGGAACCATGACGCAGCAGCAATCGGGATCCCGTTGGTTGCTTTCGAGTGGAATGGGTAGAAACTTCAAGCTCCCATTATCCAAGTCAAAAGCAATCGTTCAATATTCGTCACTTGGTACCAAAGCTCCGACTGGCGACATCTTGTGGAGCATTTCCTCTGATATGCAGAACAATGGAATGATTTCTGCTACATCCGCTTTGAGTTCACATAAAAGGAACCCTGATGTCGTGATCCCGAAACAAAGTACTAATCTACATATACGTTGTAGTTGA 3405 42.85 MKSGNGDGLGESDGGRLLEEIEAISKALYLHKGHTNSIVYPPDGRPGSHLAESKSRFNQGYHKDGESLVDETERRSSSAWNWKKSLKALTHIGHRKFNCVFYLKVHSIEGVPPSFNGYSLSVHWKRKDEVLQTRPSKVFQGMAEFDETLIHKCVIYGGRSLANHSAKYDPKLYLIYVSMLGAPGLDFGKHWVDLTRILPLTLEELEGDKCSGNWSTSFRLAGNARGASLNVSFSFLVTKDDPMKLSGPENVVQLLKLLHHKSRICNYDAHPTSTNLKGPPSPDGNISHSLEYESITSTQIFDELNPKLELSKSINLLYSKMDEADQHKSEHSGSELDEQLELKSNEENKSDEVTGGGSYDSGEFSVIECGIELAGTEDSLDKVSVPTIEGSKVETVSLDEIIEDDKVAIEMKSSVMLKDAVCVVHVDDTAEDDLEYEENNLKLKVEEVASDELSSDSDLKWTSHSVETDSPLAVGKLVDHENDMDAKENCARTSLSLDESYESVASDFLKMLGLEHGSARFSDPDILSPRERLLREFEEESLIFGNPLLDFTAAEEWQDFGSVDMEFASENQDEDFDFSSIYVAEEVQEEGHHQSLRNRRNAKILEDLETEHLMREFGLNERDFEHSPHYSSSGFGSPIELPLEEEPSKLSSLGEGFGAFLKMYGGGFLRSMSPWLSQNTSIGQSLVIQCSEPVVLPAEMGHDIMEIAQNLALAGTENLSTLAKKLMPLDDITGKTLQQMVSECPPSKILLEREPMIENNVLCSSVSFCERKDLEGLPSHQNDTSLQSLLNSEMDQDLVSPDDLAFLAIEKIETLLIEGLRIQSGLTNDETPAQITARPFHRVPACRRRRSNLGGSCSSEGLKELQFIDRPDTASDVVGLMDLSITLEHWLRLDAGNINDDDENGQHIMKTLVAHGANYADIIERLSKDINSGKSSKDLGLFGNKLVVALMVQLRDHLRDHEPVGGPMMCVMEAERLFINTARDTASETSNVNNGSEPLQAQEDSHETNKSQEKADEGHFIRAFKISAIHLLGVNSVPNKMHFWGTMTQQQSGSRWLLSSGMGRNFKLPLSKSKAIVQYSSLGTKAPTGDILWSISSDMQNNGMISATSALSSHKRNPDVVIPKQSTNLHIRCS 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22766050 22770399 - ClCG08G009980.1 Cla08g01002 278657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01002 1134 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1124 IPR039614 -
Cla08g01002 1134 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 1 1124 IPR039823 -
Cla08g01002 1134 MobiDBLite consensus disorder prediction 985 1002 - -
Cla08g01002 1134 ProSiteProfiles C2 NT-type domain profile. 89 237 IPR019448 -
Cla08g01002 1134 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 94 240 IPR019448 -
Cla08g01002 1134 MobiDBLite consensus disorder prediction 325 350 - -
Cla08g01002 1134 MobiDBLite consensus disorder prediction 325 360 - -
Cla08g01002 1134 MobiDBLite consensus disorder prediction 985 1015 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01002 - - - bhj:120075368 1927.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01002 Cla-Chr8:22766050 Cla11g01842 Cla-Chr11:32024422 1.74E-07 dispersed
Cla08g01002 Cla-Chr8:22766050 Cla03g01523 Cla-Chr3:30867630 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g122 . Blo12g01021 Bda01g00632 Bda03g00135 . Bpe02g00500 . Bma01g02204 . Cmo12g00593 . . . . Sed08g1787 Cpe07g00569 . Bhi04g01490 Tan02g1608 Cmetu03g1951 . Hepe08g1409 . Lcy13g2199 . . . . . . . Cone4ag1683 Cone7ag1600 . . Lsi04g02237 . . . . . . . . Bpe04g00118 . . . . . . Cma12g00654 . . . . . . . . . . . Cla08g01002 . . Cco08g1152 Clacu08g1153 . Cre08g0938 Lsi08g00853 . Chy03g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009716 2 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01002 Cla_Chr08 FPKM 0.35335 0.388106 0.14932 0.263688 6.834878 7.053287 6.733143 2.331474 1.942212 1.505026